Protein Info for GFF4113 in Xanthobacter sp. DMC5

Annotation: Putative tartrate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 290 to 307 (18 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 408 to 429 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 394 (369 residues), 135.3 bits, see alignment E=1.3e-43

Best Hits

Swiss-Prot: 47% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 90% identity to xau:Xaut_2926)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>GFF4113 Putative tartrate transporter (Xanthobacter sp. DMC5)
MPEPEVSAVERSAISKVCWRLTPFIGLMFFINFLDRTAVSFAGPNGMTKDLGLTAAQFGF
AAGIFFLGYILLEVPSNLALHKFGARRWLARIMVTWGIVALLFTWVSSVEGLYFLRFLLG
VAEAGFFPGAILYLSLWVPARHRNKVLALFYVAQPLTIVIGAPFASALIGADGLMGLAGW
RIMFFGVAVPAIVVGVIAWFYLVDKPADAKWLTAAERTWLTTELAKEEKAKSGAHNILAS
GALLNGRVWLLSLVYFGLIYGLYALAFFLPTIISGFEAQFGSKFSVMQKGYITAIPYLPA
AFALVLWSRQAAKTGVKPWHVGLPALVGALSIPVALYMSSPAATVAVITVTACAIFSALP
NFWAIPARFLSGAGAAAGIALINTVGNAAGFAAPFITGWVKDTTGSFQAAMLLVGGFMLL
SAVLTLVVARQGDSVADRTAAPARSA