Protein Info for GFF4113 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF01436: NHL" amino acids 262 to 288 (27 residues), 24.4 bits, see alignment (E = 3.4e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>GFF4113 hypothetical protein (Variovorax sp. SCN45)
MNTTRTASRAWRASAALLLTNLLLAACGGGGGGSGGFPGLAAAPAPAPAPQGTQTPATTQ
DETTPAITTQPSDTTIGQGVAAALKVQTVHATAYQWQRSADGGASWTDVPGANGDRFITG
ANQLADSGHQLRVRVTGNNGSVTSRAATLTVRPWVANVLATTGVSYSHPYQLLLDASGAS
LYVAMGGNGSVYKIDTGTGNGAEVTPGMTMNTPYGLALAADGTLYVSDQHRINKIAANTT
TYSTWVGSGTSGYADSPATALFNNPASIALDGAGNLFVADTENKRVRKVAADGTTSTLAG
DGTQAYLDGVGTAAQLARPQGLAISSDGATLYDTDTDSPCLRKIDVASATVSTLLGDCAN
GNAGAGVVDGTAATPAKLGYSYGVTVDAHDNVFLTQAWDGVARVVTPTGEISTLRDGNGA
AITFNFPIGVAVADDGTVYVGASNGNQIFKLTLAP