Protein Info for PS417_21060 in Pseudomonas simiae WCS417

Annotation: 2-methylcitrate dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 TIGR02330: 2-methylcitrate dehydratase" amino acids 14 to 494 (481 residues), 885.5 bits, see alignment E=3.8e-271 PF03972: MmgE_PrpD_N" amino acids 18 to 268 (251 residues), 310.4 bits, see alignment E=7.4e-97 PF19305: MmgE_PrpD_C" amino acids 300 to 476 (177 residues), 186.4 bits, see alignment E=4.1e-59

Best Hits

KEGG orthology group: K01720, 2-methylcitrate dehydratase [EC: 4.2.1.79] (inferred from 97% identity to pfs:PFLU4628)

Predicted SEED Role

"2-methylcitrate dehydratase (EC 4.2.1.79)" in subsystem Methylcitrate cycle or Propionate-CoA to Succinate Module (EC 4.2.1.79)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.79

Use Curated BLAST to search for 4.2.1.79

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2K9 at UniProt or InterPro

Protein Sequence (494 amino acids)

>PS417_21060 2-methylcitrate dehydratase (Pseudomonas simiae WCS417)
MSANVDQNNRPDYDQLLQDIADYVLNYRIDSRDALDTARNCLMDTLGCGLLALRFPECTK
HLGPIVEGTVVPFGARVPGTSFRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGG
ILAVADHLSQKRVANGDVPLTVRAVLEAMIMAHEIQGVIALENSFNRVGLDHVLLVKVAS
TAVTAKLMGANREQLLAALSHAFVDGQALRTYRHAPNAGSRKSWAAGDASSRGVRLADIA
MRGEMGIPGVLSAPQWGFYDVLFSHTNKDLALKPEDRRAFSLSQPYGTYVMENVLFKISF
PAEFHAQTACEAAVTLHPWVKDRLHEIDRIVITTHESAIRIISKVGQLANAADRDHCLQY
MTAVPLAFGNLVAEQYEDEFHAAHPIIDQLRDKMVIVEDPRYSREYLEADKRSIANAVQV
FFKDGSCTEQVAVEYPIGHRRRRVEGIPLLEDKFKANLATRFTGQRSAEIFALCKDQARL
EATPVNRFVDLFVI