Protein Info for GFF4085 in Sphingobium sp. HT1-2

Annotation: Aminobenzoyl-glutamate utilization protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01891: amidohydrolase" amino acids 48 to 409 (362 residues), 241.9 bits, see alignment E=6e-76 PF01546: Peptidase_M20" amino acids 104 to 307 (204 residues), 28.7 bits, see alignment E=1.2e-10 PF07687: M20_dimer" amino acids 211 to 303 (93 residues), 49.4 bits, see alignment E=3.9e-17

Best Hits

KEGG orthology group: None (inferred from 60% identity to swi:Swit_1049)

Predicted SEED Role

"Aminobenzoyl-glutamate utilization protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (482 amino acids)

>GFF4085 Aminobenzoyl-glutamate utilization protein B (Sphingobium sp. HT1-2)
MSRFARSFLALLALGASAPALAGPLGDGDRMAIMADVDRGADTLAKNALQIWNYAEIGFQ
ETKSSALLQQQLKAAGFTIEAGIAGMPTAFVARFMTGDGPVIGLLAEYDALPGLPQAAEP
VRKPIEGIAGHGCGHNLFGAASVAAAIATKDWMVAHRIKGELRLYGTPAEEGGSGKVFIV
RAGLTKDVSAMIHWHAADSNSASQNTALANISGKFRFHGTAAHAAAAPERGRSALDGVEA
MDAMVNMMREHVPQETRIHYVITDGGKAPNVVPDTAEVYYYVRHPNQQVVADIMDRVKKA
AEGAAMGTGTTVEFNQVGGTFDLLPNDTLGHVMYDNLKQVTLPSYSAQEQAFITQIQSSF
PKGTRMGDGSVEAYSSGGLTPASTDVGDVSYTTPTVGMVAATWAPGTPPHSWQAVAASGT
SVGTKGAVVAAKAMALTAAQLFQSPDTLAEAKAELDRRRGKDFVYRSLLGDKGPALEYRN
GK