Protein Info for GFF4076 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: ClpB protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 PF03527: RHS" amino acids 32 to 64 (33 residues), 42.5 bits, see alignment 4.8e-15 TIGR03696: RHS repeat-associated core domain" amino acids 62 to 138 (77 residues), 93.2 bits, see alignment E=5.5e-31 PF15540: Ntox47" amino acids 122 to 236 (115 residues), 213.6 bits, see alignment E=6.8e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to stm:STM0292)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>GFF4076 ClpB protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VQQQGWRTYLYDAEQPYTPVASVTGKGESRQVWYYHTDVTGTPQEVTAADGTLVWAGYIK
GFGENAADISNSGAYFHQPLRLPGQYFDDETGLHYNLFRYYAPECGRFVSQDPIGLAGGL
NLYQYAPNPIRWIDPLGLAILEHQSNFDAARRTGFENAGMTNPEDVTFSKVDPKTGTVVE
FKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKRGSGGANRGNITYDGPQHPHRSDS
KGDDKC