Protein Info for GFF4073 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 43 to 64 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 144 to 176 (33 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 114 to 278 (165 residues), 54.4 bits, see alignment E=6.9e-19

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 80% identity to mrd:Mrad2831_4373)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>GFF4073 hypothetical protein (Xanthobacter sp. DMC5)
MPEIATLKVIPATEARPEIFREDTPADAMTVVEKPLSTWELLYNWSFFRKLIILAALALA
WEIYGRVLNNDLLFPTFSATVSAFFINVMNGVLPERAWGSLRVLLMGYAIGITLAAVLTA
LAIASRIGTDFLETMTSMFNPLPAIALLPLALIWFGLGTASLVFVLVHSVTWAIALNTHS
GFLSVSRTLKMVGRNYGLRGPRFIATILIPAAFPSILTGLKIGWAFAWRTLIAAELVFGV
SSGSGGLGWFIFENKNMLDISNVFAGLLTVILIGLVVENLIFQTIERHTIQRWGMQA