Protein Info for PS417_20870 in Pseudomonas simiae WCS417

Annotation: cell division protein ZipA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details TIGR02205: cell division protein ZipA" amino acids 5 to 275 (271 residues), 268.2 bits, see alignment E=7.2e-84 PF04354: ZipA_C" amino acids 148 to 274 (127 residues), 158.1 bits, see alignment E=5.1e-51

Best Hits

Swiss-Prot: 97% identical to ZIPA_PSEFS: Cell division protein ZipA (zipA) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K03528, cell division protein ZipA (inferred from 97% identity to pfs:PFLU4589)

Predicted SEED Role

"Cell division protein ZipA" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U4Y4 at UniProt or InterPro

Protein Sequence (287 amino acids)

>PS417_20870 cell division protein ZipA (Pseudomonas simiae WCS417)
MEIGLREWLIVIGIIVIAGILFDGWRRMRGGKGKLKFRLDRNLSNLPDDDGSAELLGPPR
VLDTHKEPQLDEHDLPSMSAPVREAREPSSKRGKRAAPVVAESRQADLDLDVDDGPSFSS
RDDDFPDENAGKNAPRQSVNDQPAAEEVLVISVICRDAAGFKGPALLQNILESGLRFGEM
DIFHRHESMAGNGEVLFSMANAVKPGTFDLDDIDLFSTPAVSFFLGLPGPRHPKQAFDVM
VAAARKLSQELNGELKDDQRSVLTAQTIEHYRQRIVEFERRALTQKR