Protein Info for GFF4067 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Flagellar motor rotation protein MotB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details PF13677: MotB_plug" amino acids 13 to 59 (47 residues), 50.7 bits, see alignment 1.1e-17 PF00691: OmpA" amino acids 179 to 264 (86 residues), 33.7 bits, see alignment E=3.9e-12

Best Hits

Predicted SEED Role

"Flagellar motor rotation protein MotB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>GFF4067 Flagellar motor rotation protein MotB (Hydrogenophaga sp. GW460-11-11-14-LB1)
VSKPDHETIVKRASRRHDDEAHGGAWKVAFADFVLALMCLFMVLWVLAARDKEELSGLMT
ASGGHVVNEGRGPRVETVGGPRGSLIERFPMPARGSGGGPMAGEQVGEVQPREPGQRVRY
ESPAQLQDLAELLKLMSEEAGLRANLQTIVTPYGLRIMLHDTDREGMFQLGSATPGTKFK
DMLRRMGPLFAKIENSMLIVGHTDAKPFAGAGPHTASNWTLSSDRAAAARAHLMDGGMPA
RNVLQVVGMADRAPFEAADAHASVNRRIELLVLTEGQSGAIAAMFGAPTEEHPLVPGVQT
EMPSMDVLAALRATLLKASQGIPGLQPVLGRPADPSPVTP