Protein Info for GFF4056 in Xanthobacter sp. DMC5

Annotation: Adaptive-response sensory-kinase SasA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1724 transmembrane" amino acids 889 to 909 (21 residues), see Phobius details amino acids 930 to 948 (19 residues), see Phobius details PF07714: PK_Tyr_Ser-Thr" amino acids 112 to 266 (155 residues), 23.4 bits, see alignment E=1.3e-08 PF13191: AAA_16" amino acids 308 to 495 (188 residues), 106.6 bits, see alignment E=8.2e-34 PF01590: GAF" amino acids 1311 to 1453 (143 residues), 45.3 bits, see alignment E=5.1e-15 PF13185: GAF_2" amino acids 1311 to 1454 (144 residues), 48.5 bits, see alignment E=4.2e-16 PF00512: HisKA" amino acids 1492 to 1560 (69 residues), 29.7 bits, see alignment (E = 2.2e-10) PF02518: HATPase_c" amino acids 1604 to 1710 (107 residues), 92 bits, see alignment 1.4e-29 PF14501: HATPase_c_5" amino acids 1606 to 1694 (89 residues), 24.6 bits, see alignment 8.2e-09

Best Hits

Predicted SEED Role

"FIG01005993: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1724 amino acids)

>GFF4056 Adaptive-response sensory-kinase SasA (Xanthobacter sp. DMC5)
VDSVRDIDGNSLPLRSGMDAASFDRLALTSEGTVDGIESCLAQDELTGERWRVKSALRGS
PAAAILDREAALAQGLPIDLADPPHRLEHRNRVILLYPDRPTSTLGDLTPGTLAPEALLD
LGTAIAAALSRLHALGTIHGGLRPPSVLLEERGRVRFRHLVGPIGTDAPEAAGFMAADAI
AYAAPEQARLHRPASDARSDLYSLGVLLYGLLVGRLPLQATSMAEWLHAHVAVEPVRPGA
VRGDVPPMLDAILMKLIDKDPEQRYQSAEALQIDLRLARAALAAGDGSVTFALGRGEFAR
KGIEARGLFGRALELSQLVEAFGRVSHTGRSELILLRGEAGAGKSALVEQLSKAWLPADA
QFAAGKSVLLQEGMPYAPFAQALRTLVMRALGESADVVDGIRERLAAQLSGYSSLLIDLV
PEAEFILSDGGALPEVAASMAQARVVRIVLQTLKAFATPSRPLVLFLDDLQWMDAASLGA
LQALWREAPPHVLLIGSYREEEVARHPELASLLAEARTGLLPTTEIRVGPLSSTETLEFV
ASALNGAPAELGELADSIHRKTGGNAFFVRQLLQKLFDDRVIAFDPEAQRWRWDPLRFGA
YNSVSDFMLQRLDALPPSQRGVLQRLASVGGRVSGETFAHLVGQSEAEAEHLAVGLVEAG
LLLRRDADYVIAHDRVLEAAYASIPEPERPAEHLAIARRMIAVERDGDADWAFAMAAQIE
RADRTTLDEAERLSFVRALRTAARRARNSGAVHVAAGHIEMARSLMPDVWQVSHRALFAE
VKWLHCEILIALGRIDEALPAIERSLAIAATPVEQADLYRLKAIARTIRSDYEGAIDEAL
AGLALLGVELARSVTDEQLAQAYQACSARLNALDVSHLRDLPEITDPAMRSALALLSALS
AAFFVRGGLRVLHLIKIVELTLDHGMTPEAAYGFAWFGVFCAELYGAYEDGETYAMMAQD
IVQRDGYEAQQTAVLLALDQVGAWTRPLRFALDRAREAAQIGLTAGDLGWACYARNHIAS
NMLMLGAPLSAVRDDIEEGLAWTRQFKYRDIELILAAQFRFVDTLASGDYDGAQGVPEAE
ITSLATLFWVRHYAGVTAFLFGDFERAVLQLEQAAALSWAAPAHIDTASCALFLALALAR
TSAGAPARKAALGRIDELRRRFADRARLNPSTFECKHLLLEAEAARLSGIPADAQRLYEQ
AADAAAASGFVHEQALAYELAAYCCREAGLGIPTSGYVQAAISHYRHWGAEGKAEQLMRS
FPLLLDGGAGARQHRAGNGATDATGISAGQGGLNLEVMTKAAQTLAETVGLDQVIRTLMR
EMIVHAGAQYGLLILMRGGDPVIEASARVENQQVEVDVHSAVPTARDLPLAMLNTVMRTR
RTAVFADAASEEPGLRAAGHGGTPARSLLFMPLIKRGTLVGILYLENNLAADVFTPNRTA
LLELLATQAAISLDAARLYNDLVDENTRRASAEFDLRETRAELGRASRMMAMGNYAASIA
HEINQPLTSIVASADAAMRWLRRAEPDVDEALLGVEQIRASGMRAAGIVKSLRALAKRTA
PVLEPIRLEDLTEDVMRLVVKDLQSNGVELVDLLAVDRRHVEADPVQLQQVVFNLITNAI
HAMETVDPGRRRLTIETSQDAGTVRLSIADTGCGMSEDVLSRIFEPFFTTKHAGMGIGLS
ICRSIIEAHGGVLRARSTVGEGSVFYFSLKTLDDAARTEQDAQA