Protein Info for GFF4056 in Sphingobium sp. HT1-2

Annotation: Oar protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1114 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 34 to 114 (81 residues), 51.9 bits, see alignment 8.3e-18 PF07715: Plug" amino acids 134 to 235 (102 residues), 26.7 bits, see alignment E=6.7e-10

Best Hits

KEGG orthology group: None (inferred from 64% identity to swi:Swit_1116)

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1114 amino acids)

>GFF4056 Oar protein (Sphingobium sp. HT1-2)
MRDLKIFLAASAATACVAGALVAPAYAQETTSVIRGTVNSDNGPVAGATVTVRHLPTGTV
SVGTTGANGTFTVSGLRVGGPFTVTVDAQGFDSTQVTDINTVVAQAYELPLTLTETGSAI
IVTASRVLGAGTKASGPTTVLTAEDIAKVASVNRDIRDLMRRDPFARLDYAEGSGRAVSF
AGQNARFNRFTIDGVPVTDNFGLNPDGLPTRRSPVPLDAIAQFQTRVAPYDVREGNFQGG
TINAIMKSGTNEFHGTGFYAYSSDELTGKKTKAGPGVPTGRVTLPNFKYENYGAELSGPI
IKDRLFFMVAGERVRAGTPIAEGTPGNNAGTVIPLITDAQVEQIQNIAQSNYGYDTGGVL
NNSDDRDDRLVAKIDANLSDTQRASLTYMYTKDSIQFNQNTFTTGTPGLGLASNGYKSSN
RLHTGVFQLNSDWSDNFSTEVRAFYKDYKRGQDPVMGRGFAQFQVCTAPTSDRLNPGSAG
AGASTACQPGYGVVSFGPDVSRQSNSLTSSTYGGMLQGRLTLGGHDLRIFGEYQDTKIFN
LFLQRTAGDYYFDSIEDFQAGNAQRLRYQNAVPSFDPNDAAAQFRYQTYTFGIQDTWQMA
DQLTLAYGARLDFYGGDSRPALNQNFVNRYGFSNTAFVNGRGIFQPRIGLDYKPTSTLTL
RAGGGIFSGGSPDVYVSNSFSNTGYLSNSIDIRRNNDGTITGADAASGNAVLNNVDGTTI
NPAANTVLGNASSSVNAPTNALDHKFKIPSQWRATLSADWAPEFGGGELGRGWHFGADLF
YSDVRNQVFFTDLRVTPTALRTPDGRVRYAAVTNFADTNNDLYLTNTKKGRSYIAVARVD
KHFDFGLDLSASYAWQDVKDQAPATSSTASSNYGNGAFLDANGAAYGTSNDEVKHNIKYS
ANFEHAFFGDYKSRLSIFGETRIGRPYSYTMQDISTGRSGIFGTTGTNSRYLLYVPTSAN
DPLVSYDSVATQNYMEALINGSGLSKFRGKIAPRNAFNTRWFTKIDLHVDQEVPTGLGNS
RITLFADIENFTNFLNKKWGQIREYSFPYNVVAVRAQCLQAPVATGTAPGSAATANTGQA
CAQYRYSAPNSTPSDTIYSRQSLYTIRVGARFTF