Protein Info for GFF4053 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 transmembrane" amino acids 49 to 67 (19 residues), see Phobius details amino acids 73 to 95 (23 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 194 to 217 (24 residues), see Phobius details PF03729: DUF308" amino acids 52 to 123 (72 residues), 56 bits, see alignment E=1.9e-19 amino acids 109 to 183 (75 residues), 36.8 bits, see alignment E=2e-13 amino acids 185 to 224 (40 residues), 23.9 bits, see alignment 2.1e-09

Best Hits

KEGG orthology group: None (inferred from 42% identity to mea:Mex_2p0913)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (228 amino acids)

>GFF4053 hypothetical protein (Sphingobium sp. HT1-2)
MCHPYRSTIVSNRDRGNKPMVSDVHSDIPPHDGRAGPGLIAAFSFGWKALALRGVVSIIL
GIIALAYPFSALFALTLIFAVYALVDGIFSAISAFRRMGHGRHWGAMLLRGLLGIAVGII
FIVTPIAMTITYALLTVFLIAGWAIIAGGLEIIAAIRLRKEIEGEWLLALSGLLSLLLGL
FVLYLALANPHVSVAMLGWGIGFYALVTGVTLLILAMRLRRRVQSFKA