Protein Info for GFF4028 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Flagellar hook-associated protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF02465: FliD_N" amino acids 11 to 106 (96 residues), 73.2 bits, see alignment E=3.5e-24 PF07196: Flagellin_IN" amino acids 130 to 186 (57 residues), 31.2 bits, see alignment 3.1e-11 PF07195: FliD_C" amino acids 224 to 452 (229 residues), 231 bits, see alignment E=2.1e-72

Best Hits

Swiss-Prot: 100% identical to FLID_SALTY: Flagellar hook-associated protein 2 (fliD) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to sty:STY2168)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>GFF4028 Flagellar hook-associated protein FliD (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTA
NTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQ
LGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQ
LVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQS
NTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVE
PGEEASDKNGALLGDSVVRTIQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDD
KLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLADDGIIDNAQDNVNATLKSLTK
QYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS