Protein Info for GFF4018 in Xanthobacter sp. DMC5

Annotation: Oxalate decarboxylase OxdC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 TIGR03404: bicupin, oxalate decarboxylase family" amino acids 26 to 392 (367 residues), 480.7 bits, see alignment E=1.5e-148 PF00190: Cupin_1" amino acids 71 to 202 (132 residues), 84.9 bits, see alignment E=4.3e-28 amino acids 250 to 385 (136 residues), 80.5 bits, see alignment E=9.7e-27 PF07883: Cupin_2" amino acids 98 to 167 (70 residues), 32.6 bits, see alignment E=5.3e-12 amino acids 278 to 351 (74 residues), 36.1 bits, see alignment E=4.3e-13

Best Hits

KEGG orthology group: None (inferred from 77% identity to sno:Snov_1310)

Predicted SEED Role

"Oxalate decarboxylase (EC 4.1.1.2)" (EC 4.1.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>GFF4018 Oxalate decarboxylase OxdC (Xanthobacter sp. DMC5)
MTTSGNPPTGFYSALAQETAAAERDVSATNPGPKNRALMALNPNADCPPPTDHGVVEPFW
YSFDLTHRRIQEGGWTHQVTSRELPVSKDIAGVNMRLTRGSFRELHWHLADEWAIMLSGR
ARVTVFTPDGALFVDDVGEGDLWLFPAGAPHSIQALGEDGCEFLLVFNQGDFSEESTLLL
SDWLKHTPPDILEKNFGLDAEAIARLPKGEPLYIFPAAEPTNTLDEDIFEVARHAAPPKV
SYTFKASAMTPTRESASGSVKVIDSRNFPASQKIASAIVTVKPGCIRELHWHPNGSEWQY
WIKGRGRMTVFPGQEAARTMDFNSNDVGFVPNMAGHYIENTGDEDLVFLELFVAAEFHDI
SLNRWMRALPEQVVMAHTHLTAEEIRQIPTGHHPLLP