Protein Info for GFF4002 in Variovorax sp. SCN45

Annotation: Putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 476 to 497 (22 residues), see Phobius details PF13163: DUF3999" amino acids 33 to 496 (464 residues), 370.3 bits, see alignment E=8.3e-115

Best Hits

KEGG orthology group: None (inferred from 77% identity to vpe:Varpa_1678)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>GFF4002 Putative transmembrane protein (Variovorax sp. SCN45)
MNRHPPVSMRALGAGAALVAVMAGSAFAQPAPTAPIALQGAGPYHRLTLPLTIYSRAAYA
DLRDLRVRNAAGHAVPYAWLRSEAATPRTASRNVPIFALPGIDASAASGDAALAFTVRPD
GSLALDGKSAAASRKTTDAAQWLIDLSQVKGSLLQARFEIAPDARGLFAFRLEASDDLRR
WRPVGDEEQLVRLAHGGQTIERLAVDLGNLRTRFLRLRWSDPQHGVALTGVGIDSVQEVE
PVAPLEWSAALKPERCAADYCDYLLPRGLPVRSLRVDLADINTLAQVAISGLSGPAPASS
SAVPPQPVPRNPLYALRHQQRQPVQRPALADETPLVDTVVYRLAQAGGEARSPVLALDGA
VHARLRLRTSGPVSVLGATPPSIAVGAVPRTLVFLAQGAAPFSLAWRSAPEAVGTLEGAE
PGAPLALSTLIPGYAADKPVSADDASVELPLMSVAAAVAPAAQVPAAPVQESSRKWWLWG
ALGAGLLLLAGMAWSLFASLRKEKERAAAD