Protein Info for GFF4001 in Variovorax sp. SCN45

Annotation: FIG01199237: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1240 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 347 to 365 (19 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 426 to 443 (18 residues), see Phobius details amino acids 449 to 470 (22 residues), see Phobius details amino acids 477 to 496 (20 residues), see Phobius details amino acids 502 to 519 (18 residues), see Phobius details amino acids 526 to 544 (19 residues), see Phobius details amino acids 557 to 578 (22 residues), see Phobius details amino acids 590 to 612 (23 residues), see Phobius details amino acids 618 to 638 (21 residues), see Phobius details amino acids 646 to 664 (19 residues), see Phobius details amino acids 677 to 697 (21 residues), see Phobius details amino acids 713 to 733 (21 residues), see Phobius details amino acids 739 to 758 (20 residues), see Phobius details amino acids 765 to 783 (19 residues), see Phobius details amino acids 797 to 818 (22 residues), see Phobius details amino acids 839 to 861 (23 residues), see Phobius details amino acids 876 to 899 (24 residues), see Phobius details amino acids 910 to 933 (24 residues), see Phobius details amino acids 938 to 955 (18 residues), see Phobius details amino acids 965 to 983 (19 residues), see Phobius details amino acids 1003 to 1022 (20 residues), see Phobius details amino acids 1035 to 1053 (19 residues), see Phobius details amino acids 1073 to 1092 (20 residues), see Phobius details amino acids 1104 to 1122 (19 residues), see Phobius details amino acids 1142 to 1163 (22 residues), see Phobius details amino acids 1170 to 1189 (20 residues), see Phobius details amino acids 1197 to 1217 (21 residues), see Phobius details PF10101: DUF2339" amino acids 187 to 736 (550 residues), 347.2 bits, see alignment E=1.3e-107 amino acids 653 to 1220 (568 residues), 162.6 bits, see alignment E=9.4e-52

Best Hits

Predicted SEED Role

"FIG01199237: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1240 amino acids)

>GFF4001 FIG01199237: hypothetical protein (Variovorax sp. SCN45)
MWFIGIIAGLFIGALFESVPVALVLAVVGAFVLPQLLGKKKEKAPPHRTEAERIPGQAPA
DSATVDGGMMKLQRRVMELEQRVATLERRLTQGAGEVAAPTELPAAPEAMPAEISPPPAK
PVEVARPQVAVVQVPEPSPKPEPVVAPVVPVPKPPVAAPAPVRRPPPPPSVPLRDRLPAP
IANLIFGGNMLVKLGVLILFLGLAFLLRYTAERVTVPIELRYAAVALVGAGLLVLGWLLR
KKRAGYALILQGAGIGVFYLTTLAAMKLSGLLPASVGFAFLFGVAVLSAALAVLQNAPVL
AIVAALEGFAAPVLASTGSNQPVGLFTYLLVLDVGIVLIAWFRAWRVLNLIGFVGTFTLA
AGWAHKYYTDDQYATVQPFLIVFFLLFTAIGLLFARRTLFDAPVQPAQPLATRALDTLRR
AGRVDSSLVFGTPMVAFGMQVLLMRPWEYGAAFSAMALAAFYLVLGRMVFATQPRGLALL
AEAYAIVGVIFGTLAIPLGLEGQWTGAAWAVEAAGMYWLGARQQRVYARAFSFLVFAGAV
LKLLEATRLDAAPGHPLLDGSVIGPVLVAVSAFAMWAIHRRAKLDEGKGVEAVAGGALPW
LGMAALTLLLWQWWTPPWAAAATAVLASVTFAVAIRFALLPLAQVSFGMQALAVAGFIAT
LHRTGEIVDGRVLESGWQGALAATVIALSVLGSAAWSMRQAHRAALARGVQPVWSTGNVV
GVLAGVSLLHLAMLFQLSLAQAALLWPLTATVVLWVGLRMAHFPLAALAGVPQVISAVAF
GATQSVELDAANAPAFASLHFWTPVVLGLAALLAGDWLRDEARPRVSEPAGTARKRWSNA
WCAIPVVLWAPVVWGLGWWLFGMLGESVRVLDRHGLSIYVPAAAMAVALVTSALAALVAH
RRDWQQLGRATIATLPGFGLIAAYCVVGGPTLFYVPSSALGWIAWPLALVWHLRLLRAQR
QWFEAWVLQPFHVAGFWLFLLLAAREGQWQLGRVGAEWSSWQLLGWAIVPALVLWAMRSR
ALLRRWPLAEYRPAYLELAATPVAAYLLAWVWVTNAFSPGDAAPLPYVPLLNPLELAQWL
VLFALVLWWRALPPRSFARVQPMVAKGAAGLTGLALLTGMVLRTCHHYAGVEWRFDALYA
SWLTQAALSITWAICGVVAMVLGHSRRVRTLWVAGAALLGVVVLKLFFVELAERGGLFRI
VSFIAVGALLLLVGYFAPVPPKREEQQEPPEKAPAEGGVA