Protein Info for GFF400 in Xanthobacter sp. DMC5

Annotation: Peptidoglycan-associated lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details PF00691: OmpA" amino acids 633 to 727 (95 residues), 66.9 bits, see alignment E=2.6e-22

Best Hits

KEGG orthology group: None (inferred from 73% identity to xau:Xaut_3825)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (738 amino acids)

>GFF400 Peptidoglycan-associated lipoprotein (Xanthobacter sp. DMC5)
VYVVRQGEANTAGEGGLGQGQSRRGKGWQRLWPLAAGLAALAALTVFTILFARGPIEADL
DSAARDVLARTGESWASARFQGRDAIMEGEALAEEARAKVRASLEGLFGVRVVRDATTLL
PERHPFTFSAVKDGRTIALDGYVPSADALVRIVAAARSGGDQVTGQNRLVRARGAPPGDF
AALVIFGLGQLKRLPSGRLTLSDGAIALEGRARDLASYDELAQTLHGPLPGGMVLARFEV
RPPVAAPFLWSAVRDGTVLRLSGYVPSADARSEVAKALSSTVPGIGIKDDTLLADGAPSA
ELWMRAVRFAGAALAQLPEGRVTLSDSTISIEGAAPSFTSFDILLTLRRQPPEGFQVVRF
AVEPPRASPFTWQIERSPEQVRLSGFAPSEEARRLLLDAARSGFQGVPVADDLQLASGGP
APEVWASAASFAVAQLARMHAGSAEVSGTRMVLSGEAADSAGYLAVMQAVRTPPAGVIVD
AKGVRPPAISPYVFSVRREAGELTVSGFYPDEAAHLAIKAALERDFLREKVNDVSAVGGG
APSGFRDAVLAGLAQLSRLSSGELSVADAQMRLSGTVLDATVGGEVEAALKRAARPPFVV
ETALQLAPSAPPVSVAECGRLVGELLSRGTVRFVGATADIDPLSRGLVDRIAAVLKRCPE
GLVRVSGHTDGIGDAAANVRLSEARAKAVVAALAAEGIAPDRLTAAGLGSGQPVAPNDTE
AGRALNRRIEVEVKERAP