Protein Info for PS417_20435 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1181 transmembrane" amino acids 572 to 590 (19 residues), see Phobius details amino acids 773 to 796 (24 residues), see Phobius details PF14882: INT_rpt" amino acids 53 to 103 (51 residues), 26.2 bits, see alignment (E = 7.5e-10) amino acids 111 to 166 (56 residues), 16.8 bits, see alignment 6.7e-07 amino acids 176 to 225 (50 residues), 24.6 bits, see alignment (E = 2.5e-09) PF13009: Integrase_2" amino acids 390 to 690 (301 residues), 225.3 bits, see alignment E=1.1e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7ULJ1 at UniProt or InterPro

Protein Sequence (1181 amino acids)

>PS417_20435 membrane protein (Pseudomonas simiae WCS417)
MRKKYPELPRKPDVHYGGEWDTWNRFFGIPEPYATLAECRDAALAIGIEGLADYKKRRFE
DPRLPADPSIVYENFPKKFAEFIGKEIPPYETYAEASAAAVRLGFTSRDSYLRNRKRDPK
LPVGPSWAYPNDWKGWADFLQIKIEFLITPEQRGFYSTYEEFKAAVARLGIRTQREYQLG
YFRDSKLPSHPDNTYFEEWEGWKRAMAGRGIHYDTWQEARKAALQHRFCGSKDYHARYKV
DDRLSSNPIKKYQDFPGFDVFLLPDVYDQLDDIRLASKILKIKSRDDYEEARTRFPVLPE
APDLLFADEWVSWPDACGLPTPYSYSELQELAQLHKCKTLDEYRKLWTKLKDPRMPWKPE
DEYEEWVNVYEFLGNDLPAKLIYMPEECRLWRDDIQIHINSARSKGQRELWVCRFVRDYI
MPNGLGKSVQDFLTGGRADIKSFKAFLDTYGETHHGRRAWFAINEYLEDALKRHFTEEDE
KGYLYRVAGAANPLAGVEVEGGKAPPSESVKPVLAYFCVEEARKWIVPEDATSFRDLKNI
QSFDGDYYPVNESVIDRDDPNCIYRKSGDQYYIWYPVHWMALYTLVSVPARGRQIMYNDS
GEADEYIVELVSGAPTWVKNTRRLATLGRQQGFITHSAEGDWGMYFTSNKTSYDGVGYNV
AWIPDRLVYWLTVLRDWQRKYNPVSRVTPWIDCATRCNLSKKKLAKKTPNVFLFRGWRED
QPPIFAPSMTSRLAAALYFTQSNSVELATFESGGSKSALSRYSSIYTPHSMRVSLITAYV
LDFGLPVSIIMKIAGHSSIVMSLYYTKVGSAKLRFEMAEAEKRALLRKTQDIQIMVEQQR
LDDLQEQMVSNSEEALSAILSGQTGTQLVRDYGICPYAGSRCTDGGEKLTSSSWTPAPAG
YIGIQNCPRCRHFVSGPVFMGGLAALWNEISLSANLLWEHYSTLENEQQQHRNRIQELDY
LEAQMEASGGEFDELERLQCERANRKLHSEMEGVATKMDMYLCDMQAITKLIEDSKIALD
RQAQSKGAVAHGGSVQLIASDRSELTVGYRETSLFQQLNEVCVNATIYQSASAVMATPRR
SQIIDRMAMLNNIRPRMFELSESEQLVLGNQVTDFFFKRLNSRVLVDQLFSGELLLSELH
GPDAISHEEFARVLASGGEGSERGIGHSAHSIETAESCFAG