Protein Info for GFF3973 in Variovorax sp. SCN45

Annotation: FIG01198345: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 PF22691: Thiolase_C_1" amino acids 244 to 377 (134 residues), 121 bits, see alignment E=1.8e-39

Best Hits

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_1496)

Predicted SEED Role

"FIG01198345: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>GFF3973 FIG01198345: hypothetical protein (Variovorax sp. SCN45)
MTNARRLSYEGVAVAVPVTVPYVRYSTRTAHWFIGQALQALVEASGVTKEQIDGLCLSSF
SLAPDTAVGVTQHLGLSPRWLDHVPTGGASGVMCLRRAARAVQAGDADIVACVGADTNHV
DSFRQTLGSFSNFARDASYPYGSGGPNSIFAFITANYMRTYGAKREDFGRICVDQRTNAL
GNPNAMFKKALTLDEYMAARPISDPIHLFDCVMPCAGADAFLVMSEERARDLGLAHVVIR
GAIERHNAYAEDPVMVQGGWRKDREDLYAQAGIRPAELDFVQTYDDYPVIAMMQFEDLGF
CEKGEGPAFVQANTMTFDGSFPNNTSGGQLSAGQAGAAGGFLGMVESIRQLTDEAGARAV
PDARLGLVAGFGMVTYDRCLCTGAVILGRTA