Protein Info for PS417_20210 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 203 to 225 (23 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details PF06779: MFS_4" amino acids 14 to 372 (359 residues), 383.8 bits, see alignment E=1.1e-118

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU4517)

Predicted SEED Role

"Possible MFS Superfamily transporter precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZY0 at UniProt or InterPro

Protein Sequence (402 amino acids)

>PS417_20210 membrane protein (Pseudomonas simiae WCS417)
MSPLVRLLASFVALMMAMGIGRFALTPQMPHLLSEGQIDLTGAGLIAAANYLGYFVGAVD
SIFARSHHHVRGRLYGGLWLCVLLTLASYGAHGFWPHLLLRFGTGVASAWALVMITSLSQ
PLAIAAGRPRLGALVFAGPGLGILLTGLLALGSNLMGQNSATLWLVYGGVALVMLLAILP
FLPKPSATGTPVAGHVDTGRNASIAHLCWIYVLYGLGYIIPATFLSQMASAQFKGAWQAD
LFWPCFGLAAAIGVVVATLRRKDPDTTRRWLMTTLWLQAAGVFACLLGNGWGLALGVLLC
GGPFLACMQLVMARLRDVAPHGYQRNTGMLTASFAIGQLSGPLLASVSSHLSGGLQPALV
VAGAGLLVAGSILISRQPAAQAHAPVHAASTPGKIAHPGSSR