Protein Info for PS417_20165 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1964 PF13855: LRR_8" amino acids 1488 to 1546 (59 residues), 32.9 bits, see alignment (E = 9.2e-12) amino acids 1511 to 1572 (62 residues), 32.3 bits, see alignment (E = 1.4e-11) PF14496: NEL" amino acids 1682 to 1902 (221 residues), 58.9 bits, see alignment E=9.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U722 at UniProt or InterPro

Protein Sequence (1964 amino acids)

>PS417_20165 hypothetical protein (Pseudomonas simiae WCS417)
MAEPPAYTPSLAAFTAEQTASGPFLTRDEWSSLQALDAVRSKFDGFLDGLDDEEKREYVR
LQKAWVQARKAVEDGVPRFIERFEQQSLASLRDALKTLTGSDVDPKTARIYTRYLAPARR
VRREAQGDQVKVASLTLWEAACMNYDGVTGWSFPGNTGIADASYMDSSINASAAAFIALV
RKLNIGETLRTSLAQALRASSSLGDAIMRQASAEFEFALINALKDRATSRVDKAKYHQLK
RALVGEVRWGQIEEMHLFIPHGIDNISWVPQHIGLTGQYVGSPPGDSVKIPHIVFSVSGC
KGAFSYFPHRPSGALLHYDSHREACTEFYMAFQASYGNGDVSWLYPLMTLRDSVRLKQIA
TSQPRPEQLSPQAEVLYDLVEWLPKTTLVKRVGYVRQSVEKTPMVCLHDFYTARCRTNLQ
ELAAETPGWMVTVSRVFQTVLGETLDLLLIPAPGPLKGLGRLRAVAMFAVLTQSLIEGGA
MAVQGDSVELLQTLVDLADLLISSRLHTRLARSVMRRHQALYRQLSPPGSVAGERVDTAL
LERMLGASQAPVKSLNAVLEASNTPRQLLDKVWEGERPSASLVEASQRFNVDRLIDWASS
PSPPSHPPPTQAFEVLGPLVTQLAQWPVDTALSVENPQGLELRRYTQQAGRPASRVVTVT
RQENFQFAYSSPRRFTANFLQAVVDLLPAVFSAGEPPLRQQLALRARTVRLELFEALTRF
AQADRATASGAPTAIKNLLPERVGSDQPEPAVISTLRALHPEVSLPRLLEVLDQQPLSSH
QQTQLLASKLQPEALYTALRSARRAARREAMIDGIFHGRRYDAQTLRWAGEFAGAVLKSV
TGQALVISRADQPVHYMSKGAKDRTVVVLDHGRGRFAPFDHRTSLAGARLGTPDGFYQAI
LNQLTHNERVRLGLEGPQAVTDFRHRIARAMLDHRTVEGQFYPHQRDIAQYSSAADTMGL
TPDALGLFRQGADCFLYMDGLCFNVSQAGPTLPWRIPHPTLHDAYAPVLTHNGAGAWRHE
WETPLTWDGHKPFYRLGPAVGAWSPDAINQIQQVSGVTPAMLRRVHLRNERPPAILMETI
ERFTLHRRVKAGVETGWDFFDELLGEIGPESADVLVGSAGLSRADQVRRLETFVAQDKPG
MARLFFKALLHKSALSSEPLAQVLQRDFPSLTAQIAEDLVRDLTPVERRSLEAGRVPLTK
TKAIRWWIEYLRKTRAMEGVHLGGAASADSSKLILHTVAEMDGWSVQTRVEVRERGRLID
RVGPAEGRPKRVLEALDGRYQAFAPQSNGTLQPLGNPGDFLTVLLDALPPPERQAVGYTH
AGGVEELTQEICYRLERHWEFAETLLEIGRRPWYNPPRRVADGRIGYPLSGGNELGAVDR
DQVARLRQLFPTKTDEQAFEILENLSDSVQEREDAINTLFRERDALNDSLERWCLLGKPE
QLKAQVEASARIRRCWSKEDSPRGVMFELYLDDLALEDLPQVTAHFGHVMQLSLRKNLLQ
ELPMKFLGRFPALRTLFLDGNRLDHVPQGLSALQHLKQLSLANNRIQPESADIRRLQGLT
RLTTLNLSNNPLGRGKRLNVYALTALEVLKLRNTQLDLLPLWVVMLPRLRTLDLRDNRFK
VLTHSDLHLNETVYRAMNLHGNALSQATLRLLSQYRRRPGYQTIDFGLWHDGAFPLPSVE
RWLLPVPLNEVPQRRAEWALLAGAQMADGFFNLLWNVSSYPPLIAPEHHALRQDITRRVW
QLIDGANHNGRLQQILFQTPLRYMSGGIDGWLLCLNEIELAMLPVQMLAGNVDAAGPDFV
NYYRALRRLGAIDHHLLRAFPQQSAQEACVRFLAYRIALASSLDLPLALPGRFDAATAVP
DAPSVIRILQRIKNEELNLNWPSRLENEEYWVEFLERKYPQRFEAALAHYQRELELATDK
VTNGDINEGTYKHALESLAVQMRQAKADLVRVLTLQEWTEFVIA