Protein Info for GFF393 in Xanthobacter sp. DMC5

Annotation: Beta-barrel assembly-enhancing protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 PF13432: TPR_16" amino acids 4 to 38 (35 residues), 18.9 bits, see alignment (E = 1.3e-06) amino acids 47 to 105 (59 residues), 18.3 bits, see alignment 2e-06 amino acids 83 to 136 (54 residues), 25.1 bits, see alignment 1.4e-08 amino acids 111 to 174 (64 residues), 23.6 bits, see alignment E=4.4e-08 amino acids 180 to 229 (50 residues), 23.9 bits, see alignment 3.4e-08 amino acids 215 to 277 (63 residues), 34.8 bits, see alignment E=1.3e-11 PF14559: TPR_19" amino acids 16 to 78 (63 residues), 31 bits, see alignment E=2e-10 amino acids 85 to 135 (51 residues), 29.6 bits, see alignment 5.4e-10 PF13181: TPR_8" amino acids 108 to 137 (30 residues), 13.8 bits, see alignment (E = 4e-05) amino acids 175 to 206 (32 residues), 12.3 bits, see alignment (E = 0.00013) amino acids 209 to 241 (33 residues), 13 bits, see alignment (E = 7.4e-05) amino acids 313 to 343 (31 residues), 13.3 bits, see alignment (E = 5.9e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>GFF393 Beta-barrel assembly-enhancing protease (Xanthobacter sp. DMC5)
MQKDFRADLARAGALHREGRLDQAIPIYRAILREAPNSFEVARLLTLALLQSGRPKEAHA
VARKARDGHKSNPHAQLIMGAVYQAEEKWDRALAAFEKSAELDPGLVEAHYLAANTLARL
GRLEEAVTRYNRVLGIDGRSVEARANRSTALLQLGRLQAALSDIELLIAQLPGEARFWAA
KATTLYELNRPGEAVNAATQAIRLAPRSAEGYVIKGRSLMASGQLKEARDCFVAGLERDP
SDMKAREALIVVLRHLEEFPAALAQCNLALAQAPGAALFLQHRAEIRRAEGDFAGALADV
EAALAADPGLASTHVTRARLLGDLGRPDEMRPALDTALRLDPNEPNGRFMAAADDLARGR
WEVGWAAYESRDHLLPPPYRPLDFIRWDGRERPELLVVAGEQGIGDELLFFRLVRALADD
GIRTVLLTRPGLVPVLKNLDARVAVAGDLSAIDTTQPGLRWVPAGSLPLLLQPNPEKWPA
APYLTAPPERIAKWRWVRDEGRFNVGINWQGNPSRNVDVGRSIPLSAFAPLAEIPGVRLV
SLQHGPGTEQLRKVAFANSIIELGDDFNADGIFIDTVGILHHLDLVVSSDTALTHLCGAR
AHPTFAALRAVPDWRWGYSGDRSVFFPSVRLFRQSEAGDWGGVFNAIADEIRAMAAGR