Protein Info for PS417_20105 in Pseudomonas simiae WCS417

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1445 PF13641: Glyco_tranf_2_3" amino acids 13 to 126 (114 residues), 27.3 bits, see alignment E=4.9e-10 amino acids 829 to 1053 (225 residues), 53.1 bits, see alignment E=6.3e-18 PF00535: Glycos_transf_2" amino acids 14 to 137 (124 residues), 75.8 bits, see alignment E=6e-25 amino acids 830 to 946 (117 residues), 65.1 bits, see alignment E=1.2e-21 PF05045: RgpF" amino acids 327 to 546 (220 residues), 67.2 bits, see alignment E=1.8e-22

Best Hits

Predicted SEED Role

"O-antigen biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZW6 at UniProt or InterPro

Protein Sequence (1445 amino acids)

>PS417_20105 glycosyl transferase (Pseudomonas simiae WCS417)
MTNPLPTSRLPLVSIAIPAYNPRFFEAALSSALNQSYANLEIVITDDCRDDGIRLITERL
AAQTAVPVRYLHNEQQLGGQLNLSRCLEESRGEYIKFLNDDDLLLPNCVERLAAVLEARN
DISLVTSRRRLIGTEDEPLPDILQTCEVFDKDACLQGADLISLLCDWPVNFIGEPSTVMF
RRAQLIDKAPHICALGGVVIRAINDLAMFVNLLQRGHLAFIQEPLSLFRRHAEQRQNQPD
MQDLFDQGLANFTRQIHALGLYNPQPSSQVRRAPLSAPEAFELFHVQGAYLACDFQPLIT
SHSAAPLVGECEVLVAEQPVLEDGEPPIGVVIHVYLPGVLLDILRRLVLLHERLHLYVTC
VAGLEDTVHSHLAVSGLKYSLYRVPDHGRDALPFLHVLANLRADNITTLVKLHTKRSAHM
GTESSWAHDLFDDLLSPVRFRQSVEYLAAPSHHPLLGTEPYRAQVTQDLEEEDRQRLLAL
AERAGIDSQRIDDADFFAGSMFFVRIEALAPLERMNLTGKDFDTERGQLTGTLAHAIERF
FGVLANAGKHQRNIDQYRRWLDTRQLSTADFEGLPTRLAGWPQHTDVLVVLTDTTGDIAQ
LRASLESINRQLYKAAAIVVLSNSEPAGMTPADNLVWLPLAESWPSQLNELLQAIQVDWC
YLLRGGDRLDPHALLLLAEGIALNPGISMCYTDEDSLTATGYQDPVFKPDLNLDLLRSYP
YVGRALAFSRESALNLNGFDPAFAELAPHDLLFRLIETHGLGTVGHLADVLVHQQINFGQ
WLGEPQVIAHSAAIVQAHLQRLDVAHEMRTGPLPMVNRVIYQHAGQPLVSIVIPTKDQLP
MLMRCIESVMEKTRYTNYELIIIDNNSETAQAREWFTGMEQLNNAKVRILRYPHPFNYSA
INNYAASQARGEYLVLLNNDTAVIDGDWLGAMLHHAQRPEVGIVGAKLLLLDGTIQHGGV
VLGLHGVADHPFVGDPIQSNGYLHRLQVDQNYSAVTAACLMIRADLYHQVGGMDETSLGV
SFNDVDLCLKVGQAGQLIVWTPYALLMHEANVSQNKVDTTRLEAKRERFKREQSVMYQRW
LPQLANDPAYNRNLTLEGRGFAYECRSDAGWHPFASHQLPYALCYPGDFFGSGHYRVRQP
FAALKAAGLIEGAVSDWLLQPVEVERHAPDTIIFQRQFTTPQLEIIENTKAFSKAFKVYE
LDDYILDVPTGNASRQLFPKDTANRLKQAIGLCDRLVVSTQPLADALEHFNADIRVMENR
LPGTWWNDLTSHRQQGRKPRVGWAGGSSHGGDLRVIAEVVRELAQDVEWVFMGMCPPELR
PYVHEFHQGVTIEKYPSRLAGLNLDLALAPLEDNFFNACKSNLRLLEYGACGFPVICSDI
RCYSGELPVTRVRNTPKDWIAAIREHLTERDASARAGDALRSAVLKNWILKEEHLVAWRN
AWLKT