Protein Info for GFF3924 in Sphingobium sp. HT1-2

Annotation: Outer membrane component of multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 72% identity to npp:PP1Y_Mpl11081)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>GFF3924 Outer membrane component of multidrug efflux pump (Sphingobium sp. HT1-2)
MWRAMALPMLVAAMGAGTLPCAAGAALSVDATPAPTAGQPSTPLTLDEVLQSSARSAPDI
IAALARARQAEGRAISAQGAFDTVFSVDARSRVEGYYDGTLIDSKVERPLTGNGGYVYGQ
YRNSRGDFPVYEDKAYTNRAGELKIGALYALMRDRLIDARRSASQIAGNDIDIARFETRA
TAIGVQARAIAAYQKWVASGLKLKAYEALYDLAESRSQGIVRQVQLGAKSAILLTENEAN
MVKREALVVQARQEFMAAANSFSLYYRDADGLPILVDAARLPASAAAFDGLRINPLFAIE
DRPDFGILLEEIDNASVKLALAENDTRPKLDFEGQVAKDVGAQGLGGYSRTPLEVIVGVT
FKVPLQNRKARGKVAESQAKIDELTVKQRYLAEKIRTEVAGIGIEVDAARVLVDTTRRQR
DLAERLAQAERRRFDLGSSDFFLVNSREEAATDAAVKLIEAQARIAAAQAEMAAATADDR
ALGLDRS