Protein Info for GFF3920 in Xanthobacter sp. DMC5
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 88% identity to xau:Xaut_2031)Predicted SEED Role
"Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.7.1)
MetaCyc Pathways
- nitrogen remobilization from senescing leaves (7/8 steps found)
- L-asparagine biosynthesis III (tRNA-dependent) (4/4 steps found)
- glutaminyl-tRNAgln biosynthesis via transamidation (4/4 steps found)
- ammonia assimilation cycle III (3/3 steps found)
- superpathway of ammonia assimilation (plants) (3/3 steps found)
- L-glutamate biosynthesis I (2/2 steps found)
- ammonia assimilation cycle II (2/2 steps found)
- L-glutamate biosynthesis V (1/1 steps found)
- L-glutamine degradation I (1/1 steps found)
- L-citrulline biosynthesis (6/8 steps found)
- L-glutamate and L-glutamine biosynthesis (5/7 steps found)
- superpathway of L-citrulline metabolism (8/12 steps found)
- GABA shunt II (2/4 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.4.7.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (569 amino acids)
>GFF3920 hypothetical protein (Xanthobacter sp. DMC5) MPVATKPEYKSAPQPEGGADGLFMSSSTRGLLRRWSVFIAVTVIALVSLLLSFASHQAWL IVFCVLFPLVLVGIFDVTQSEHSLLRNYPVIGSVRWIFEAMRPYLRQYLMEDDQSERPYN REDRSIVYARAKNEEDRQPFGTQLDTYAAEYEWMTHSLAPAPVAHEPFRVAVGGSACAKP YSASVLNVSAMSFGSLGRNAIEALNLGAKTAGCYHDTGEGGLSPYHRMHGGDIVWELGSG YFGARNRDGTFSPERFAERATDPQVKMVEIKLSQGAKPGHGGVLPAAKVTPEIAEIRGIP HGEDCISPSRHSAFSTPAQMMEFVAQLRELSGGKPVGIKLCVGHPSEVFALAKAMVKTGI QPDFVVVDGAEGGTGAAPHELADHLGMPLREGLILMRNALVGTGLRHEVRLAASGKVTSG FSMAANMAIGADWCNAARAFMFSLGCVMSMRCHTGTCPTGVTTNDPHLQRGLVVDEKAER VANFHRHSVHALAELVAAAGLEHPGDLLPHHVWHRVSPIEVKALDRIYTFLPAGALLDAP DETPYAAEWRAADADSFAPRQAVGPRRAA