Protein Info for GFF3916 in Xanthobacter sp. DMC5

Annotation: Inner membrane protein YbhN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 249 to 278 (30 residues), see Phobius details amino acids 291 to 315 (25 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 28 to 308 (281 residues), 36.2 bits, see alignment E=2.5e-13

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 79% identity to xau:Xaut_0184)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>GFF3916 Inner membrane protein YbhN (Xanthobacter sp. DMC5)
MGTRTFAVRVSTFFKERVGLHGLGFILSLIVIGFAAVVLYRMLHNLKWSDVLDALREKNP
RDVAIAFFLVAGAYLTLTFYDWFALRTIGKGHVPYRTAALAGFCSYSVGHNVGFTVFTGG
SVRYRIYSAWDLGAIDVAKICFVAGLTFWLGNIAVLGLGITLHPEAATAVDQLPPFVNRL
IGVGALCALVAYITWVSLAPRTIGRSTWFVTLPRGPTTLLQVGIGILDLSLCAAAMYMLM
PASPYIDPISLSVIFVTATLLGFASHAPGGLGVFDAALLVALPQFDKAELLGALLVFRLF
YYIVPFAFALTLLGARELGLRIAGKERAAAEKAEAKARAAVSKTPAE