Protein Info for GFF3910 in Variovorax sp. SCN45

Annotation: MORN repeat family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 59 to 78 (20 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details PF01650: Peptidase_C13" amino acids 326 to 452 (127 residues), 66.1 bits, see alignment E=1.9e-22

Best Hits

Predicted SEED Role

"MORN repeat family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>GFF3910 MORN repeat family protein (Variovorax sp. SCN45)
MIGAMPEDIIAPPTPLESAEELPASTPPQPRAGLLRWIAGGLRASALLDPRVDARPAPWQ
LLLLVLLPELAWTGLARLEIDGPARLYATVNLNTLWSLGVLAWLGWFALSGRAGNNGLAR
WFVLATWAMLPANLALSLLALGYTRGWLPATLAGSPGYWIAFGLGCAWIVLALARFTARE
AGARWRLAIFVPAFTAMLALTFWQSLYTQERVWQADASASSEPERPRMRLTQELFEEQQA
LWDHTVETLAAGTPGQANVYGLVFAPYASEDVFLRESRMVAALLEERFDAKGRVIHLMNH
ATTAETLPWATPLNLERAIAALAERMDRENDVLVVYLTSHGARDHKLAAAHWPLSVPWLT
PEELREALDKAGIRHRVVAVSACYSGGWIEPLANDDTLVMTAADATHTSYGCGRLSELTF
FGRAMFNEELRKTRSFEAAFAAAVPLIRQREIDAGKDDGFSNPQISMGEKIRPVLDQLAR
RLDAAGK