Protein Info for PS417_01990 in Pseudomonas simiae WCS417

Annotation: cell division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 transmembrane" amino acids 263 to 281 (19 residues), see Phobius details PF13401: AAA_22" amino acids 48 to 167 (120 residues), 50.1 bits, see alignment E=5.3e-17 PF05036: SPOR" amino acids 437 to 510 (74 residues), 48.3 bits, see alignment E=1.6e-16

Best Hits

KEGG orthology group: K03112, DamX protein (inferred from 97% identity to pfs:PFLU0413)

Predicted SEED Role

"DamX, an inner membrane protein involved in bile resistance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3S8 at UniProt or InterPro

Protein Sequence (523 amino acids)

>PS417_01990 cell division protein (Pseudomonas simiae WCS417)
MTSLHADEAFLGHYQLSHDPFAPRVPGFKFFPAQRKPVLGQLHHLARYSQLLLVVTGPLG
SGKTLLRQALVASTNKQSVQSVVVSARGAGDAAGVLRQVAQSLDVATAEPNAILKQVVQL
GLTGQEVYLLVDDAEQLDESALEALLALAAGTPEGRPHVFLFGESSLIADLEQISGDQEL
FHVIELQPYEEEETREYLAQRLEGAGAGIELFSAQQISDIHESSDGWPGTINQVARDAMI
EAMIASRTAVKRPKMGFTMPKKHVLAISAVVVVAVAAAWLIPGRSKAPTTAGAPTEQAQL
PLGKPTPNVEFANSGQPTNLPMVGQPVMRGPLAEEAGGISEGDDGVPVEGSSATPPTVTT
TAPPAGVPAGQPAAKPTPAPTPAPTVATAKPAPVTKPVAPAPTVKPTPAPAAKPAEKPAA
TVAKAGAAGSSWYASQPSGNFVVQILGTSSEANAQAFVKEQGGEYRYFKKVLNGKPLYVI
TYGNFSSRAAADSAIKALPAKVQAGKPWPRTVASVQQELATTR