Protein Info for GFF3907 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 78 to 106 (29 residues), see Phobius details amino acids 121 to 159 (39 residues), see Phobius details amino acids 171 to 195 (25 residues), see Phobius details PF04893: Yip1" amino acids 19 to 187 (169 residues), 72 bits, see alignment E=2.9e-24

Best Hits

Predicted SEED Role

"probable membrane protein YPO2362"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>GFF3907 hypothetical protein (Sphingobium sp. HT1-2)
MSDSNPVSTPPGIADRAKAIILRPRDEWPVIEAEPASIGSIYTGYAMILAAIPPLATLIG
GQVFGHGLFGITWRPPLIGAIGMAIAHYVLSLIGLAVLAIIINFLAPSFGGQRDKLKAFK
ISAYSATAGWLAGIFSLLPGLGMLGLLGLYSLYLLYLGLPRLMKVPEQKALPYTIVTMVA
GALLFILASLLAMPFSGLLGGHTDPDDISADIMVPGIGKIDVDKMDAATKQMEQAAKRME
EATKNGRSAAIAPDVLQALLPEKIGRFTRTEIESSGMSAGAHASARYRAGDDEIELEVND
IAVAGAFAGIGAALNVQSNRQTASGYERTQTIDGRIVTEEWDKDSRHGKYATTLADRFMV
EAEGTVADIGELKAAVNALDLDRLSALAAK