Protein Info for GFF390 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 89 to 113 (25 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 179 to 206 (28 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details amino acids 307 to 328 (22 residues), see Phobius details amino acids 334 to 351 (18 residues), see Phobius details amino acids 361 to 385 (25 residues), see Phobius details PF13231: PMT_2" amino acids 75 to 228 (154 residues), 34.7 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 77% identity to xau:Xaut_3796)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>GFF390 hypothetical protein (Xanthobacter sp. DMC5)
VTDTYLDRDAPASAAAGAQGAVPFWARPEGVAFFVGLWMVLHAVIAVVFEIAVNADDAIE
SYMVQSLELSYVPRNPPLFDWLLWALQRVLGVGTLSFAVLRYTLLFACAMLVYRVARRMI
ADPRLQALATFSLSFIWVIGYHSHRILTHSNVMIVAIAGAFLTVMALSRQRSLGLYAGLG
LWIAAGTLGKFGFVAFLGVLLVACLLEPTYRRVILDPRLLVTFVVAAVPLGIYGFALWHY
GQNVAEATAQTIGITGAGWDAVVSTMVGALFGYVLPLVLVVALVFLPYNRGDGATPDTPE
RGAARRVLRSVIVIGIAVTLVSTLAMGTASLRDRYFHVFLLLLPVYLFAELERLGGWRPR
VWIYLTLLAVVSGGIMISRMVVPLWPDPRLCGRCIAAEPLYKLQVLVANKLGASPTLVAD
DRTSAGRLRAAIPGARVVIVRENQYRPPSRPTTGCARVTGIFNGLPKLLLPPADQNTIGV
SVKWWSPWMNPHRWSDWQMTILPPDDPLCR