Protein Info for GFF3888 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF04321: RmlD_sub_bind" amino acids 1 to 293 (293 residues), 364.6 bits, see alignment E=8.1e-113 PF01370: Epimerase" amino acids 3 to 166 (164 residues), 56.8 bits, see alignment E=5.8e-19 PF02719: Polysacc_synt_2" amino acids 3 to 143 (141 residues), 32.3 bits, see alignment E=1.5e-11 TIGR01214: dTDP-4-dehydrorhamnose reductase" amino acids 3 to 293 (291 residues), 312.7 bits, see alignment E=1e-97 PF16363: GDP_Man_Dehyd" amino acids 37 to 140 (104 residues), 43.4 bits, see alignment E=8e-15 PF07993: NAD_binding_4" amino acids 38 to 157 (120 residues), 20.7 bits, see alignment E=5.3e-08

Best Hits

Swiss-Prot: 100% identical to RMLD_SALTY: dTDP-4-dehydrorhamnose reductase (rfbD) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K00067, dTDP-4-dehydrorhamnose reductase [EC: 1.1.1.133] (inferred from 99% identity to sty:STY2306)

Predicted SEED Role

"dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)" in subsystem Rhamnose containing glycans or dTDP-rhamnose synthesis or linker unit-arabinogalactan synthesis (EC 1.1.1.133)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.133

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>GFF3888 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVN
AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD
ATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN
DQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT
LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI