Protein Info for GFF3887 in Variovorax sp. SCN45

Annotation: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01118: Semialdhyde_dh
  • amino acids 9 to 126 (118 residues), 92.1 bits, E=3.4e-30
• TIGR01745: aspartate-semialdehyde dehydrogenase
  • amino acids 9 to 387 (379 residues), 583.3 bits, E=9e-180
• PF02774: Semialdhyde_dhC
  • amino acids 151 to 373 (223 residues), 139.9 bits, E=1.1e-44

Best Hits

Swiss-Prot: 72% identical to DHAS_BORPE: Aspartate-semialdehyde dehydrogenase (asd) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K00133, aspartate-semialdehyde dehydrogenase [EC: 1.2.1.11] (inferred from 92% identity to vpe:Varpa_1564)

Predicted SEED Role

"Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)" in subsystem Lysine Biosynthesis DAP Pathway or Threonine and Homoserine Biosynthesis (EC 1.2.1.11)

MetaCyc Pathways

• aspartate superpathway (24/25 steps found)
• superpathway of L-lysine, L-threonine and L-methionine biosynthesis I (17/18 steps found)
• superpathway of L-isoleucine biosynthesis I (13/13 steps found)
• superpathway of L-methionine biosynthesis (by sulfhydrylation) (12/12 steps found)
• L-lysine biosynthesis I (9/9 steps found)
• superpathway of L-lysine, L-threonine and L-methionine biosynthesis II (13/15 steps found)
• superpathway of L-threonine biosynthesis (6/6 steps found)
• superpathway of S-adenosyl-L-methionine biosynthesis (8/9 steps found)
• superpathway of L-methionine biosynthesis (transsulfuration) (8/9 steps found)
• superpathway of L-homoserine and L-methionine biosynthesis (7/8 steps found)
• L-lysine biosynthesis III (6/7 steps found)
• L-lysine biosynthesis VI (6/7 steps found)
• L-homoserine biosynthesis (3/3 steps found)
• L-lysine biosynthesis II (7/9 steps found)
• dipicolinate biosynthesis (3/4 steps found)
• ectoine biosynthesis (3/5 steps found)
• chorismate biosynthesis II (archaea) (8/12 steps found)
• L-methionine biosynthesis IV (2/4 steps found)
• spermidine biosynthesis II (2/4 steps found)
• norspermidine biosynthesis (3/6 steps found)
• 3-dehydroquinate biosynthesis II (archaea) (3/7 steps found)
• superpathway of polyamine biosynthesis III (3/8 steps found)
• cremeomycin biosynthesis (2/7 steps found)
• grixazone biosynthesis (2/8 steps found)
• platensimycin biosynthesis (6/26 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of plant hormones
• Glycine, serine and threonine metabolism
• Lysine biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.1.11

Protein Sequence (389 amino acids)

>GFF3887 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (Variovorax sp. SCN45)
MANASQPLVGLVGWRGMVGSVLMDRMQAEGDFGLIEPIFFSTSNAGGKAPAMAKNETALK
DANDIEALKKCDIVITCQGGDYTSEVFPKLRAAGWNGHWIDAASTLRMKDDAIIVLDPVN
LPVIENALAKGGKNWIGGNCTVSCMLMGVGALYKAGLVEWMTSMTYQAASGGGAQHMREL
LTQFGTLNAEVRALLDDPKSAILEIDRKVLHKQQNLSAAETANFGAPLGGSLIPWIDKDL
GLGKSQDDAEWGMSKEEWKGGAETNKILGQGAGFGTAATPVDGFCVRIGAMRCHSQALTF
KLKKNVPLADIEAMIAADNSWAKVVPNTREATVKDLTPVAVTGTMNIPVGRIRKLAMGPE
YVGAFTIGDQLLWGAAEPLRRMLRILLEA