Protein Info for GFF3879 in Xanthobacter sp. DMC5

Annotation: 30S ribosomal protein S20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00029: ribosomal protein bS20
  • amino acids 1 to 86 (86 residues), 78.7 bits, E=1.9e-26
• PF01649: Ribosomal_S20p
  • amino acids 2 to 84 (83 residues), 102 bits, E=1.2e-33

Best Hits

Swiss-Prot: 94% identical to RS20_XANP2: 30S ribosomal protein S20 (rpsT) from Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

KEGG orthology group: K02968, small subunit ribosomal protein S20 (inferred from 94% identity to xau:Xaut_1690)

MetaCyc: 42% identical to 30S ribosomal subunit protein S20 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S20p" in subsystem Ribosome SSU bacterial

Protein Sequence (88 amino acids)

>GFF3879 30S ribosomal protein S20 (Xanthobacter sp. DMC5)
MANTPSAKKAVRKIERRTEVNRSRRSRVRTYLRKLEDALATGDATAASAAFKAAEPEIMR
AVTKGVIHKNTASRKVSRLAARVKKLSA