Protein Info for GFF3873 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 163 to 180 (18 residues), see Phobius details amino acids 191 to 217 (27 residues), see Phobius details amino acids 229 to 253 (25 residues), see Phobius details amino acids 276 to 298 (23 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 337 to 353 (17 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 425 to 445 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 74% identity to xau:Xaut_0014)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>GFF3873 hypothetical protein (Xanthobacter sp. DMC5)
MTPPILPATHSTSAAAHAHHGHPPERRPHDLRPWQILLLFAACLGLVSIPILTHPIPPLS
DYVNHLARMHVIASIPGDQDLARFYTLKWSILPNLMMDLIVPVIDKVVGIYTAGEIYTLM
CFALIAGGTMTLNRTLFGVWSALPLLAFPLLYSGVFLIGVMNYYFGIGLALFALSAWVAL
RDKWWPWRYLVSAAFVVALFFCHLFTAGIYGIGILAYELDRLRLGRGPIWPRIGVFVSGG
LPFLPIVPLLLASPTWGLSGQNYWEPQGKITGIELIFNVYIDHVAVAVAAIFIVAGVWAA
RHRLLYVHTFMLPLLLVAGLVYLAMPRVVFATYMADQRLPAAIVFMVLAAMRVDLRHRLA
RRGFAVVLILMLAVRVGEVQVVWDRLSQWTVAFRESVTHIRPGSRVLVAYADIQGGNDPT
DLGLMHAACLAMIEKSSLVTTAFTVEGKQILRARKPFNEQVDTEDGTPPQTEQLLITEED
PTPDGPRYWDLWPSKFDYVYLLFTERGAPNPDSDHLKLVSEGERFQLYEVVPRPPAPPS