Protein Info for PS417_19750 in Pseudomonas simiae WCS417

Annotation: flagellar motor switch protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 TIGR02480: flagellar motor switch protein FliN" amino acids 72 to 147 (76 residues), 111.7 bits, see alignment E=5.9e-37 PF01052: FliMN_C" amino acids 76 to 145 (70 residues), 87.3 bits, see alignment E=2.7e-29

Best Hits

Swiss-Prot: 77% identical to FLIN_PSEAE: Flagellar motor switch protein FliN (fliN) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K02417, flagellar motor switch protein FliN/FliY (inferred from 97% identity to pfs:PFLU4427)

Predicted SEED Role

"Flagellar motor switch protein FliN" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UF73 at UniProt or InterPro

Protein Sequence (155 amino acids)

>PS417_19750 flagellar motor switch protein (Pseudomonas simiae WCS417)
MATEHENTSAEDQALADEWAAALEETGDVGQDDIDALLAADAATAPAGNRLPMEEFGSVP
KNNEPVTLDGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLV
NGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR