Protein Info for GFF3850 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 30 to 48 (19 residues), see Phobius details amino acids 58 to 75 (18 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details amino acids 291 to 296 (6 residues), see Phobius details amino acids 305 to 312 (8 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 7 to 161 (155 residues), 104.4 bits, see alignment E=2.7e-34 PF05145: AbrB" amino acids 30 to 337 (308 residues), 264.5 bits, see alignment E=5.6e-83

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>GFF3850 hypothetical protein (Sphingobium sp. HT1-2)
LDTLLRFLAALAVGAAGGALFWSIHAPLPWVLGSMAACAVASVAGLPIQASAATRRPMAA
VIGVVLGSSFGPHLLPQARDWIIPLAALPFFLATAALLCVTYFRKVAKFDPATAYFAGMP
GGIAEMVVMGAERGADERAIGLIHGARIFLVVFILPFLIRLDHAPVAASAITPVTGDVAS
WSLLFWGLGCALLGLLIGRLLRLPAWHLVGPLAVSAAVHMSGLADFRIPGWALAAAQVGL
GATMGCRFVGLTLKELLRILALAAGSTAILLAVTFAWAAGIGTLAGVDAVLLTLAYSPGG
LAEMSMVALSLALEPGVVVIHHLTRVILVLIGAPLGFASMGRKSGAD