Protein Info for GFF385 in Variovorax sp. SCN45

Annotation: Outer membrane protein assembly factor YaeT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 811 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 32 to 811 (780 residues), 821.6 bits, see alignment E=3.3e-251 PF07244: POTRA" amino acids 33 to 98 (66 residues), 25 bits, see alignment E=3.9e-09 amino acids 100 to 180 (81 residues), 50.4 bits, see alignment E=4.6e-17 amino acids 184 to 271 (88 residues), 55.5 bits, see alignment E=1.1e-18 amino acids 275 to 347 (73 residues), 44.7 bits, see alignment E=2.7e-15 amino acids 355 to 429 (75 residues), 51 bits, see alignment E=3e-17 PF01103: Omp85" amino acids 456 to 811 (356 residues), 232.1 bits, see alignment E=1.9e-72

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 92% identity to vap:Vapar_2607)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (811 amino acids)

>GFF385 Outer membrane protein assembly factor YaeT (Variovorax sp. SCN45)
MNKNFSRFRLRSVVAVVASALAATAAWAVEPFTVRDIRVEGLQRVEAGTIFASLPLRVGD
TYSDERGSAAIRALFELGLFKDVRIDVNGNVLVVIVEERPTIADVDFVGTKEFDKAALTK
ALREVGLTDGRPYDKALTDRAEQELKRQYVSRSLYNAQVVTTVTPIERNRVNLTFTVTEG
ESARIREVHVVGNKAFSESTLLSLFDQDSGGFMSWYTKSNQYSRAKLNADLETLRSYYIT
RGYLEFRIDSTQVAISPDRKDLTVTVNISEGEKFVVAGVKLDGNYLGRDDEFKSLITIKP
GEPYNGEQVTETTKAFNDYFGTFGYAFARVQARPDIDRVNNRVTLTLQAEPSRRVYVRRV
MVGGNNKTRDEVIRREFRQYEASWYDGDKIKLSRDRVDRLGFFTEVNVETQEVPGSPDQV
DLTVNVAEKPTGSLQLGAGYSSSDKVALTFGISQENVFGSGNFLGVQVNTSKYNRTLSLT
TTDPYFTKDGISRTISVYHTTTRPYSTSEDGDYKLVNQGASIRFGVPFSEVDTVFFGIGL
ERYAFDPNRSSIFAGLYTPNSYLSYFKCQKDSTGFFVLGCDQKSVWGVPLSVGWGRDSRD
SALTPTTGRLQRANLELGVGGDMKYIKTNYQYQQFFAINKQYTFSVNGEVGYAKALGSTT
YPIFKNFYAGGLGSIRGFEQNSLGPRDVPLFGQTDGAALGGTKKAIFNAELSTPFPGAGN
DRTLRLYSFFDIGNVFGSRAPGLTDAQWSAQKKLRASVGLGVSWISPLGPLRLAYAFPIK
SQKEVTDPNTGLVTIPKDRIQRLQFQIGTSF