Protein Info for GFF3841 in Sphingobium sp. HT1-2

Annotation: Acidobacterial duplicated orphan permease (function unknown)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details amino acids 342 to 365 (24 residues), see Phobius details amino acids 385 to 413 (29 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 712 to 735 (24 residues), see Phobius details amino acids 755 to 780 (26 residues), see Phobius details amino acids 797 to 817 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 21 to 244 (224 residues), 74.6 bits, see alignment E=1.4e-24 PF02687: FtsX" amino acids 301 to 418 (118 residues), 57.7 bits, see alignment E=1.2e-19 amino acids 714 to 827 (114 residues), 55 bits, see alignment E=8.6e-19

Best Hits

Predicted SEED Role

"FIG00687710: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (834 amino acids)

>GFF3841 Acidobacterial duplicated orphan permease (function unknown) (Sphingobium sp. HT1-2)
MWRNYLTVGLRSLLKSRTYAAINILGLATGMAACLIILLFVRNELTFDAWMPQADRTFQF
QTYYTDPHGGRENNLQMAPYVAQAALRKDFPQIAAAVHLLSAGPVVLRNGVATEVDDMKF
VDGPVFDVLDLPLVKGDPRTALAKPGDMVLTDSEAKRRFGSEDPMGQTLTLISRGISTDY
RVNGVLKDLPKASHLKLTMLARYDPPSYWAQTPDFLSQYGWQSGWIYVRLKPGADVKAIN
AQLPQWEKRNIPDQFFGGRRFNQGDDMNFALVNVRDVHLGRAQNGSMTPGNDRGSIITFA
IVALLILGMACVNFVNLATARASQRAREVALRKVLGANRRQLVLQFIGESILVSAVAMLV
ALALTELLLPLVSRFLDADLSLHYFGSGGLILPIIGLVLLVGVAGGAYPAFYLSRFQPAR
VLKANKSAADAEGSGRLRSALVVAQFAVSIGLIICTAVVYAQTLYARNSDPGYKREGLIQ
ISGISRRQLDPVLDTMVREIEKVDGVTSVGRTNIGISTTNNTNSGILVPGREEPISMGIY
QVDTKFFDTMGIKLLAGRSFDINRPIDDITRPFPEVPEAERAFAARGANTVVNELAVKRL
GFASPQDAIGKQVRGGLVRDEFGGSVPITIIGVVQDSRFRSIRDPMDPIFFLFDRDNHNE
MLIRYHGNPATVLARIESVWKRLAPEVPFTARFSDDIVREVYHAEEARAQAFAAFALLAV
IVGCLGLFGLSAFTAQRRTKEIGIRKVLGASTGKIVQLLVWQFTRPVLIANLIAWPVAWW
VMRDWLNGFDSRIALTPLPFLLAGGLALLIAILTIGAHSFRVARTNPINALRYE