Protein Info for GFF3838 in Sphingobium sp. HT1-2

Annotation: Uncharacterized protein PP2677

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04557: quinoprotein dehydrogenase-associated SoxYZ-like carrier" amino acids 38 to 253 (216 residues), 197.4 bits, see alignment E=1.1e-62 PF13501: SoxY" amino acids 43 to 147 (105 residues), 89.9 bits, see alignment E=1.3e-29 PF08770: SoxZ" amino acids 174 to 255 (82 residues), 32 bits, see alignment E=7.9e-12

Best Hits

KEGG orthology group: None (inferred from 74% identity to sjp:SJA_C2-05660)

Predicted SEED Role

"FIG01095237: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>GFF3838 Uncharacterized protein PP2677 (Sphingobium sp. HT1-2)
MNRRKTLTAMAMSCLLAIGSIAPARAPYPADPLHSPMWTAHAQTIFGDDPVRFDPRVKVS
YPEIAENQRSFPVALDARGLGSVRRMLILADLNPIPIAIDYRPDGAEPYVATRIKLDQRT
PVRGAVQLADGQWLVSGGWVDAAGGGCSAPPVSRVKGDWAQHLGEMRGEAWPMADGASRL
RVTFRHPMDTGFVANIPTYHIEQMRVTGPDGRLLGEMEIWAAVAEDPAITLMPRAHPGDM
LSIAARDTNGRAYLAKVTVARQSPLPATTGATGR