Protein Info for PS417_19570 in Pseudomonas simiae WCS417

Annotation: terpene utilization protein AtuA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07287: AtuA" amino acids 5 to 440 (436 residues), 497.3 bits, see alignment E=3.9e-153 PF23544: AtuA_ferredoxin" amino acids 480 to 581 (102 residues), 99.8 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU4392)

Predicted SEED Role

"3-hydroxy-3isohexenylglutaryl-CoA:acetate lyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9T0 at UniProt or InterPro

Protein Sequence (592 amino acids)

>PS417_19570 terpene utilization protein AtuA (Pseudomonas simiae WCS417)
MSKTVRIGCASAFWGDTCTAAAQLVHGGKLDYLVFDYLAEVTLSILAGARMKDPQAGYAT
DFVEVLTPLLADIQRQGIRVISNAGGIHPQACAAALQAACDKAGIKLNIAVLLGDDLLPQ
LKQLHGITDMFNGTPLPPVCVSANAYLGAPGITQALALGADIVITGRVVDSAVVSAALVH
EFNWSWQDYDRLAQAALAGHIIECGAQCTGGNFTDWRDVPDYEHIGFPIVEVGADGQFTV
GKVDGTGGLISELSVAEQLLYEIGDPRAYLLPDVICDFSQVKLQQQGKNCVRLHGARGLP
PTDQYKVSATYPDGFRCTASCLIAGIDAVAKAERVSQAIIHKTSELFSQRGWAPYTEVNI
ELLGSEATYGAHAKRQDCREVVVKLAVRHPSKQALVLFAREIAQAATGMAPGLTGIVGGR
PTVYPLIRLFSFLIDKSACQLLIDLQDKRHTCSLPVADAPALPDAPIDPPKPRGRADASV
PLVKLAVARSGDKGNHSNIGVIARDPEYLPWIAEALTPEVIVDWMGHVLDPVHGRVERWY
LPGSHSLNFLLENALGGGGIASLRIDPQGKAFAQQLLEIPIAVPQHIADSLT