Protein Info for GFF3815 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 TIGR01686: FkbH domain" amino acids 234 to 560 (327 residues), 264.8 bits, see alignment E=1e-82 TIGR01681: HAD phosphatase, family IIIC" amino acids 236 to 359 (124 residues), 59.4 bits, see alignment E=6.7e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>GFF3815 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
VRERLAAVARPPLPELMACATDIAALAAEGGAARRVALAADLTPDLLRQAIACAIAQEGE
LAWVHAAPYGVMRQECLDGGSALHAFKPEVVVLVPDWRQALEPLPLEADAAAVAADTARQ
VQAFEAIWAALEARGCRIIQHLFVPPSVQWRGMADRRSPASTARRVQALNEALIDAGAGR
VTWLEADRLAAGVGLAAWSAPRFFHAGKLGFDPRFLPDYLPWFRGAWRAATGRTRKLLVL
DLDDTLWGGTIGDDGLDGIALGPAHGGKGEAFAAWQQHLAGLAQRGVVLAVCSKNAPEIA
ATGFEHADSALRREDFAAFVCSWDDKATGLRRIAQELNLGLDAIVFVDDNPAERALVQQL
LPEVAVVDIGADPAQFIERLEAGHWFDQQAYTEVDHGRQAAYAALRQARAEATSSADIGS
YLAGLAMQGRAAPALAQDLPRLAQMELKTNQFNLTTRRYTQAQLTAQMQQPDRLALAFHL
KDRFGDHGLVGSLLAVREGDALRIDSWLLSCRVFSRTAEAFILRTLVQWAREQGASTLVG
EYLASARNAVVADLYARLGFVALSDDGRWWQRELAAPLDDLASAIAEASP