Protein Info for PS417_19465 in Pseudomonas simiae WCS417

Annotation: cell division inhibitor MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR01968: septum site-determining protein MinD" amino acids 2 to 267 (266 residues), 382.7 bits, see alignment E=4.1e-119 PF10609: ParA" amino acids 2 to 245 (244 residues), 50 bits, see alignment E=8.5e-17 PF13614: AAA_31" amino acids 3 to 156 (154 residues), 64.5 bits, see alignment E=3.6e-21 PF06564: CBP_BcsQ" amino acids 3 to 148 (146 residues), 25.5 bits, see alignment E=2.8e-09 PF09140: MipZ" amino acids 4 to 142 (139 residues), 30.9 bits, see alignment E=5.2e-11 PF01656: CbiA" amino acids 5 to 226 (222 residues), 69.2 bits, see alignment E=9.8e-23 PF02374: ArsA_ATPase" amino acids 6 to 40 (35 residues), 31.1 bits, see alignment 4.4e-11

Best Hits

Swiss-Prot: 74% identical to MIND_ECOL6: Septum site-determining protein MinD (minD) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 99% identity to pfs:PFLU4370)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9R2 at UniProt or InterPro

Protein Sequence (270 amino acids)

>PS417_19465 cell division inhibitor MinD (Pseudomonas simiae WCS417)
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDF
VNVVNGEANLQQALIKDKRLENLYVLAASQTRDKDALTKEGVGKVLAELKETFEYVVCDS
PAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSKRAEEGQDPIKEHLLLT
RYNPERVSNGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSD
AVDRLLGKTVEHRFLDVKKKGFFERIFGGN