Protein Info for GFF3799 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 129 to 148 (20 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 227 to 247 (21 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 317 to 334 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 331 (282 residues), 131 bits, see alignment E=2.4e-42

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 92% identity to xau:Xaut_1863)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>GFF3799 hypothetical protein (Xanthobacter sp. DMC5)
MALTSLRPCGDYRTSYKADQTIFQTRLTLVFVILAIAALCCTPLFASRYVLSLMIQIGYL
GIAALGLNILVGFSGQISIGHAVFFGFGGFASAFLADKGVPVPLAIVLAGLWTTVVGLIF
GLPAARVKGLYLAIATLAAQFILQDFFVRAEWFTGGTHGAIAAPFTLFGYDLSGDARYFY
VVLFFVVVGYIGATNLMRSRDGRALIAVRDHYLSAEMMGVNLTKYRTMAFGISSFYAGIG
GALYAHYVGFMSVEGLDILFSIQFLGMIIIGGLGSIMGSLMGTVFMVLLPEATGWLASAL
SGSVIDQVLHLKDGITYMREMLIGLTIILFLIFEPDGLAHRWRLIKAYWKLYPFSY