Protein Info for GFF3797 in Variovorax sp. SCN45

Annotation: Ammonia monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 19 to 41 (23 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 74 to 91 (18 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 254 to 271 (18 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details amino acids 338 to 363 (26 residues), see Phobius details PF05145: AbrB" amino acids 46 to 363 (318 residues), 261.3 bits, see alignment E=5.2e-82 TIGR03082: membrane protein AbrB duplication" amino acids 207 to 363 (157 residues), 124.1 bits, see alignment E=2.3e-40

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 90% identity to vpe:Varpa_5445)

Predicted SEED Role

"Ammonia monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>GFF3797 Ammonia monooxygenase (Variovorax sp. SCN45)
MGAVPSISAFSCPSVPFRFLVRVLATLLLALAAAGACLVLHTPLPWMIGPLIAVSLASIA
GLPTASHTPLRNAGQWTIGMALGLYFTPHVVSLVASVWWAIALAIGWALLLGWGFGRWLH
GVHSARMPHVPEKSMRATTYFSGAIGGASEMTLMAESAGARTDLVAAAHSLRLVVVTVTI
PFAMQWSGLHGLEINPPGVREVNPGGLALLAAATGLGGLAMRALKRTNPWFIGPLLVAMG
FTMAGQSLSAVPTWMSNTAQLVIAVSLGVRFSREFLHTAPRWLGSVVLGTFGMLALCGGV
AWLLAAATGLHPATMILGTSPGGIAEMSITAKVLQLGVPVVTAFQVCRLVAVLLLVGPMF
RWIYRRR