Protein Info for GFF379 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Annotation: Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 78% identical to RFAQ_ECOLI: Lipopolysaccharide core heptosyltransferase RfaQ (rfaQ) from Escherichia coli (strain K12)
KEGG orthology group: K02849, heptosyltransferase III [EC: 2.4.-.-] (inferred from 99% identity to sty:STY4071)MetaCyc: 100% identical to lipopolysaccharide heptosyltransferase III (Salmonella enterica enterica serovar Typhimurium str. LT2)
RXN-22462 [EC: 2.4.99.25]
Predicted SEED Role
"Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-)" in subsystem LOS core oligosaccharide biosynthesis (EC 2.4.1.-)
MetaCyc Pathways
- superpathway of Kdo2-lipid A biosynthesis (23/25 steps found)
- lipid A-core biosynthesis (Salmonella) (10/10 steps found)
- lipid A-core biosynthesis (E. coli K-12) (8/10 steps found)
KEGG Metabolic Maps
- Anthocyanin biosynthesis
- Carotenoid biosynthesis - General
- Flavone and flavonol biosynthesis
- Flavonoid biosynthesis
- Fructose and mannose metabolism
- Glycerolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- High-mannose type N-glycan biosynthesis
- Keratan sulfate biosynthesis
- Lipopolysaccharide biosynthesis
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Peptidoglycan biosynthesis
- Sphingolipid metabolism
- Zeatin biosynthesis
Isozymes
Compare fitness of predicted isozymes for: 2.4.-.-, 2.4.1.-
Use Curated BLAST to search for 2.4.-.- or 2.4.1.- or 2.4.99.25
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (338 amino acids)
>GFF379 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868) MLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALS LIKKLRANSYDLVVNLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHLVPYAGE HAVERTLSALKPLALKQYVTETTMSYRPEHWENMRQQLKQLGVTRQYVVIQPTARQLFKC WDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTRFPELGA LIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERH ELDRNKKYLSVIPAEDVIAATEKMLPHEARTIDLDSLL