Protein Info for GFF3764 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 869 transmembrane" amino acids 45 to 65 (21 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details TIGR02302: TIGR02302 family protein" amino acids 26 to 866 (841 residues), 816 bits, see alignment E=2.2e-249 PF13779: DUF4175" amino acids 26 to 866 (841 residues), 933.7 bits, see alignment E=4.6e-285

Best Hits

KEGG orthology group: None (inferred from 75% identity to xau:Xaut_1882)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (869 amino acids)

>GFF3764 hypothetical protein (Xanthobacter sp. DMC5)
VSASRDGKLPRRPQDRTPEETARDLLERAISRARYAVFWERAWPAFARVGVPLALFLAVS
FAGVWVSAPVWARIVGVVLFALAILFAARPLLALRWPSREEAVARLDARSALAHRPATAI
SDSLATRPDDPVGAALWRAHLARALAAARSLKAGTPSPGLARLDPRAVRALAVLALAATI
FMAPGQHLSRIGAAFDWKTIVPPPPYRLDAWIDPPAYTGRPPVVLPGLRSDDPTSLNAAA
LQVPVGSTLVVRGSGIDTAAIKLDGGIAEAKPEADAPTTAGEKRYVIREDSDVTFLGPDQ
RRLAWHFKVLADQKPTISFAKDPQTGQRNALVLSYRMEDDYGVKEADALFTPLPPEQTLF
PRPGASPRKMAQPLIPPPDFKLTLPAGGRTGAAQTTKDLVAHPWAGARVEVQLKARDEAG
NEGVSDTKVVRLPARAFSKPLAKALIDERRRLTFDASNRRRLVTVLEGLTLAPAQFAPSA
SEYLGLRTALARAKNARNDDDLRALVDYLWEVAVLIEDGTLSDAERELRAAQEALREALE
RVASDEEIKRLTQDLRAAMEKMMRQLAEQARRDSGTDARPLDPNTRIVRPQDLQKMLDRI
ENLARSGNKDAARELLDQLQAMMENMRPGSRQAGRQQQGQQQQSEIGKMIQEQQRLRDRT
WRQNREGQQGQQGQQGQQGQGQQPGENGFSDLQQGQQELRKRLGRMLDQMRRMQEGQQGQ
GQGQQGQNGEGGEGDAMGRAGDAMGRAEQAMREAEEALGRGEGQGALDAEGRALQSLRQG
AQAMAEAQRGQQEGQGPGGPGEESAQRTDPLGRPLRSQDYGDDFTVKVPDEVDAQRARRV
LEELRRRLEQPERPQIELDYLERLLRGLN