Protein Info for PS417_19220 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1614 transmembrane" amino acids 421 to 431 (11 residues), see Phobius details PF20178: ToxA_N" amino acids 74 to 344 (271 residues), 132.7 bits, see alignment E=4.7e-42 PF14496: NEL" amino acids 1331 to 1546 (216 residues), 177.9 bits, see alignment E=5.2e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UP43 at UniProt or InterPro

Protein Sequence (1614 amino acids)

>PS417_19220 hypothetical protein (Pseudomonas simiae WCS417)
MRPKDDLNNKLNQLTQRQLQAALLEMTGDLDKAQLLQKKLPGWMVNAPPGVLQALEREVV
QVAGAQASVAERMKPLQALDEFCNERLKDYCQTRWQLTLEPKKDRFVRAVNEYETELLPL
QYVKKVRLVRDSLLHVAMQNFSEQEAQAQHYPAGSLLQSGSAAGEVIGLSPHAFAQGCRA
LDLGRLYQQHIRDVLKLDSAPASDEPYINDVATDIGRMKTLDMKIDAHIALMRGDITQAT
YGMLCALLDRSLTPSQAQAAGVRFQGLPVIWQGLNTQGGCLWSILVFSGRSIVQYPHEPC
VVYMPNEPERPLFEYSSLDDFQVYLKRKSEVAAYRTFFSRYLSQGDRAGFFSRFEHAHTL
GVLQENRITVSLAQHFFDAYTAKLQADARALAVPVADVDEEVREQRLQAYLDAGLTVLNL
AGFVVPELGMLMTGVALGQMLGELYEGIEDWRRGDKEEAFKQLAGVAETITSMVLFAAGS
KVVGSVLKRSGLSLDSFFGKYEVVRPADGNQRLWRPNFIQYAHDRSLIDEPADASGVYKV
EGHSYVVINDCVHRVSFDAKLGQWRAHHPARHTAYRPEVLHNGEGCWRFALEKPDEWEDP
EYLFSRLKPTGPGASLPPRKLLQIKSIMDKPHDWGVYQAQECLPFPARFRDLYERFRLDQ
SIRDLIWQLENGASPSLENSTVQMHALPLLQGWPEGRYFELLDAQGSVKARYPANAASNP
VSLRLPVTEQMLSEGKVFDVLLSGLDKPQKIALLGEGVAADQEHAVLSRQLLAQLKADHK
PLFEQLYQAYDGPVPPEGALLRRAYPQLPCTLLRELMAETSTVQRESLHDNQRIPMALAE
AVQRALGEQRLDRALMGFEQPELASLDTALLAVRSMPRVAGWGRELQLELREDSPQGELL
ALGALTGASVRRVVVRSDAGFEAFNDKGLRIGGPYAGPDGLFEAIDAALTGRQRVALGLP
PEEASNLWRLRYMCASQAKGERELAAEAFSGKVKEPVLEAASCRMADSPTGPLVHPPALV
RKVKGLYPLFSDGQVSSLLLALGADHLSRAKAVKRLEAELAHLRALLRHWKSDIQGLDKQ
PGLSDIRYSREQVAERLEACWRRQSFALNEHQTSVPSLNLDGMRIGSLPTLPPEIRFDHV
EQLSLKNMQLGDDVAYFLKCFKGLRRLDLDRNRLTRLPEILSRMLALDSLSMPRNRLALT
EYTRVKLADMSTLRRLDLSHNPLEKLVDVGKMRDLHTLLLQDTKITDLPVGLGRLAQLEQ
MDLRGNSITVLPEWVFTTPRSFSQSVNLGGNPLSRSTVEALERYRDEVGIGMGYVEDDQP
RMTELKARALWLPKDTASRDAHKRAVWANLRDDPESAPLFELLAQLSATADSRYVREDLT
RRVWEVLQATHDSVGLRERVFQLAAHPANCSDGTAQIFSQLEVLKEVESATLQAGRAQGN
SGALLKLSRGLFRLSELEKIASTYAAEHFSVDPLEVSLAFRVGLAQSLQLPGQPKHLNFA
LFANVTNEGLEVAHSQVRTAELSPAFLRFITQLAFWRAHLKQQFPDAFQSATASFDSRQQ
TLFENSQNLTDAQYLEQMEALRSPRRRAISGVVERLTQQMLKDQDLGICHVPGN