Protein Info for PS417_19205 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 105 to 122 (18 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details PF00892: EamA" amino acids 10 to 144 (135 residues), 78.1 bits, see alignment E=3.7e-26 amino acids 161 to 297 (137 residues), 42.8 bits, see alignment E=2.9e-15

Best Hits

Swiss-Prot: 42% identical to YHBE_ECOLI: Uncharacterized inner membrane transporter YhbE (yhbE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU4315)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9L2 at UniProt or InterPro

Protein Sequence (318 amino acids)

>PS417_19205 membrane protein (Pseudomonas simiae WCS417)
MHISSGRWVYGFLLTLLTALLWGILPIKLKQVLQVMDPITVTWFRLIVAGSCLFVYLALT
KRLPRRSVLGPKGGWLVGMAVCGLVGNYVLYLVGLKRLSPGTAQLVVQMGPIFLMIASVF
VFKERFSRGQVLGLFVLIAGFGLFFNQRLEELLTSLGAYTAGVLTILLATSIWVFYALGQ
KQLLTVWNSLQVMMVIYLTCALLLTPWAHPLEALDLSPLQAWLLLACCMNTLVAYGAFAE
ALAHWEASRVSATLALTPLVTFVAVALAAWLWPAYVQAEEINALGYAGALVVVLGSATVA
LAPSLLAGLKARRLRVAP