Protein Info for GFF3749 in Variovorax sp. SCN45

Annotation: ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF00005: ABC_tran" amino acids 38 to 178 (141 residues), 109.8 bits, see alignment E=2.5e-35

Best Hits

Swiss-Prot: 44% identical to SSUB_BACCZ: Aliphatic sulfonates import ATP-binding protein SsuB (ssuB) from Bacillus cereus (strain ZK / E33L)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 62% identity to bur:Bcep18194_C7649)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>GFF3749 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) (Variovorax sp. SCN45)
VKPGAVATGEAAAGAMAAAISVRGVAKTFDARQGVRALEQVDFSVPRGEFVSILGPSGCG
KSTLLRMVAGLIQPDAGGDVRVLGHSQTQMSDDVGVVFQTHNMLPWETVEANIRLAAEVR
KLPKKDIDERVEALLPILKLEKFRRNYPHELSGGMRQRAALGQILVMRPKVLLLDEPFGA
LDALTRDQLNVELLRLWQEMRQTVILITHSISEAVFLSDRVLVMSERPGRVIEDIRIDLP
RPRDPRTTKEAAAFGHYVVQLGHLMGVD