Protein Info for PS417_19180 in Pseudomonas simiae WCS417

Annotation: sugar-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 910 TIGR03696: RHS repeat-associated core domain" amino acids 585 to 664 (80 residues), 83.2 bits, see alignment E=1.5e-27

Best Hits

Predicted SEED Role

"Putative insecticidal toxin complex" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEW3 at UniProt or InterPro

Protein Sequence (910 amino acids)

>PS417_19180 sugar-binding protein (Pseudomonas simiae WCS417)
MSHLLHQHTPTLSAIDPRGLAVRSVAYHRDTSQDLPRARIERRVFGSQGRLLEQWDPRLH
ALSESASASVRPNQRQYYSLSGQLLCTDSVDAGWQMSLLGGGGQVLERWDARGSHQCYEY
DTQVRPLAIFEQAADQPARRCVERLTYAAAAPAERAGNRCGRLIRHADPAGVLWMGGYGI
GGSVIKQTRRFRMDTPTVDWPPSDETQAEQLEPNAYTTTWRYDALGALLELIDAKGNRRH
QRYGQQGWLLEVALTLRGGTRQVLMNQRVYNASGLVESERMGNDVTKRAKYAAEDNRLLQ
LTVYRKGEAAKPLQDLVYVYDPVGNILSLSDQAQPTKWHSNARIDAVSRYQYDSLYQLTQ
ASGRENAGNRGGQATAERVTFGATAPGLWRNYTQHYTYDENGNLTRLRHVPSSGAGYTRD
MNVAVGSNRALSVTDGAPQPWATMFDANGNQQILGSGQQLGWNVSNQLTHATQVRRAQGD
PDVERYLYDGQGQRAAKIRSQQVAGKPHTHITCYLPGLHLHGQPGKRLSVLEIDTGGGRA
TVLQWEAGGTSDMSEEQLQFSILDHLNSHLLELDGQAQLLSQEHYYPYGATAWWATNGTQ
RATYQVRRYAGKERDATGLYYYGSRYYAPWLQRWISPDPLGDVDGLNLYAMTLGNPLRFT
DADGTQASFGEQFQPSRGDIIFGKGSTVTSYRSFWSKLTARGDAMVTYFGAEEMGAAMAR
LKTELIPVYVEYGKGRLTADEFEQQLQVHGAPIAQQFYDAIKSKYAGCTSTAANRAFAKK
FVSDYSSGTYSFEKTLLDHGMSLRTFEGKLVSRASKSALKTLTDPQSIRHVHFALDHLDM
ANVINKTETSFAGSELRWLYRHRSRVPGHVTFYHQKQQVDAPWRSDPSLWRRYKPVSSLS
RSRGSIRATH