Protein Info for PS417_19170 in Pseudomonas simiae WCS417

Annotation: insecticidal toxin complex protein TcaB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1624 PF20220: ABC_toxin_N" amino acids 8 to 134 (127 residues), 100 bits, see alignment 1.2e-32 PF18413: Neuraminidase" amino acids 166 to 312 (147 residues), 77.1 bits, see alignment E=2.1e-25 PF18276: TcA_TcB_BD" amino acids 1329 to 1614 (286 residues), 231.8 bits, see alignment E=1.4e-72

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UP35 at UniProt or InterPro

Protein Sequence (1624 amino acids)

>PS417_19170 insecticidal toxin complex protein TcaB1 (Pseudomonas simiae WCS417)
MSETLDQHLSEAWRDAMLAYYLAHCIDTELKDSLRTPNDLYDYWLLDVQISQAVPTSPVA
SAITSLQHYINRIHSGLEPGYETQGMSPHESLAWQKSLHTYPLWSASQQLRYHPHNFLDP
TLREDKSESFQQLENDLNQHRIQPNTVQNAIQGYLSRFEGIASIHTLNGYIDGNVAQLDT
STYYFVGKSATDNLYYWRSLDLSKRSTGKPDAPAPLAWTDWEPVNLTFSADTPDHSIRPV
LFNHRLFIVWAESIKPAPYQSFKAQGNGNGDYEDNGDDEKQRQTEWLNSRFVKFRLCFSY
KKLDGTWSLPHTGLEEHCVTRGINALTSAQLISITQTVAVVDSRAPHTLFLGIRANTLNH
GSDQMGDFFQAISVDQSLGIKIVASAGSPGRYKIVPGSDVAQETIRLLEAYEATKNTPLQ
TALLGGADPGNVFSSVLLPPFAHQYFRLFFDINKDNLQFKTRVALEQDKRTVTLAAQALE
TEHQKTWDFEFRSKDIEAADTATTSFDPVTKEFVFTSKTIQPFLQTYSITLASQYSAFSI
TLVTKSALHDPTSFEVELMSGSNIRIDCAIHPVGSATYHSMFFKNPRTGKSFSNAIYDKN
SILLNLVGQMNTMPDMRPGQQNQVKPVTEYSLAGKFLNKNAFLHLYTHHQDPFLAILDRY
SGYALPGDEAANKKLHFMNDLRLESVNTSMPKVRFYKHVIMQSKLEDVPTPQAINNNTAR
ILNFTDVEHESLAGAFPELATGHLASTRITLPDEQTASAITVIHGVITLESQENEVKVLG
YALKAVKCTLDTSLTVDEPAHSPRIMRQQQTTGETVESIDFSTSFVRKIPAIRLNTSVAR
QLIQTALLSFDPLFLRSPEDWTEPALTADASRVPLDFQGAHGKSLRELFIYLPWTLAHCF
NQQQQYAQAETWLHYLFDPRRTDAGALSVLLSKTVELSYACQHPQSPHYLALSFPTYLRK
ALYLLNVDILINRGDAAYRQVSPDSLAEAKLWYIQAQNLLGLRPTITRADAWTSRTLRTL
AQADSPAVRQLEQQPEYTALLSRQCETTGQRTWLTDSPYFYRPLNTQLVTRWDTLESRLH
GLRHHLDIAGKPLRQTLFATPLPPAALLTRNAQSATGGASALSPVRPEVGHYRFQVMQGH
ALSAVDSLAQFGTTLLTLIERKEQAHYLEVQQQNAWQLAELVLTQQTQALAIDEKNKDAL
RRSRAIVHGRLDFLAHQLSEGVSTGEMSAGQHYLESAAWERKVAIAGMGAGAAMLAPNIF
GTSFGGMRFEGAFQAYQAFAQGEANTARANGNELERTEQFNRRAQEWAYAEQQARLELAQ
IDALLLVHAEQEKATRLQLRSAHSALAQAKSAYQLLGMRFTGAQLYQWLTAQLSTFYYAL
YDSVHSLCLAAEACWQYETAESRQFFQGEAWHHASRGLLSAENLKLNLVKMNTAYLQHTP
RELEISKTVSLRHRLIECSVITEGQASQAAKTWVAHKAGLVSSGTIGFSLTQALLDEDYP
GHTLRRIKHVSVSLPATLGPYEDIKATLTQTSNKIQMPDGITKNDFRAHQQIALSRGLDD
NGLFTLSFDNDPRYLPFEYTGVISNWILEFPNPARQKAVLESINDIVIHLRYTARVPAAN
GSRA